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This special page shows all uploaded files.
Date | Name | Thumbnail | Size | User | Description | Versions |
---|---|---|---|---|---|---|
18:17, 19 September 2011 | Dr. Rigney -UAB IT Research Computing Day.pdf (file) | 1.94 MB | Jpr@uab.edu | Dr. Rigney UAB IT Research Computing Update for RCDay2011 | 1 | |
19:27, 16 September 2011 | HPCBootCamp2011-UsingGitForDevelopment.pdf (file) | 1.88 MB | Pavgi@uab.edu | HPC Bootcamp 2011 presentation slides for 'Using Git for Development'. | 1 | |
15:14, 16 September 2011 | Goecks-uab-2011.pdf (file) | 9.95 MB | Dls@uab.edu | 1 | ||
14:51, 16 September 2011 | UAB RCDay 15September2011 UNC Research Computing.pdf (file) | 866 KB | Dls@uab.edu | Ruth_Marinshow presentation | 1 | |
11:25, 16 September 2011 | Research-computing-platform.png (file) | 31 KB | Jpr@uab.edu | Schematic of hardware resources in the research computing platform. | 1 | |
10:16, 16 September 2011 | Transcript control vs drugged with fold.pdf.png (file) | 1.04 MB | Curtish@uab.edu | 1 | ||
10:09, 16 September 2011 | Transcript control vs drugged with fold.pdf (file) | 54 KB | Curtish@uab.edu | 1 | ||
08:08, 16 September 2011 | RCD2011 DNA-Seq Workshop Talk.pdf (file) | 828 KB | Curtish@uab.edu | 1 | ||
07:13, 16 September 2011 | Tophat accepted hits BAM IGV Sox6.png (file) | 40 KB | Curtish@uab.edu | 1 | ||
06:17, 16 September 2011 | Fastqc summary.jpg (file) | 31 KB | Ozborn@uab.edu | 1 | ||
21:50, 15 September 2011 | SNPEffResultTabular.jpg (file) | 18 KB | Ozborn@uab.edu | 1 | ||
21:36, 15 September 2011 | CMV21950RvsVACWR CompareData.jpg (file) | 20 KB | Ozborn@uab.edu | 1 | ||
21:16, 15 September 2011 | RCD 2011 Welcome to Galaxy tutorial.pdf (file) | 2.48 MB | Curtish@uab.edu | Original PPT (with animatoins) at ftp://ftp.genome.uab.edu/ICS/Galaxy_RNAseq_tutorial/RCD%202011%20Welcome%20to%20Galaxy%20tutorial.pptx | 2 | |
21:14, 15 September 2011 | GalaxyTutorialSharedLibrary.jpg (file) | 44 KB | Ozborn@uab.edu | 1 | ||
20:06, 15 September 2011 | SamBamFileFormatFlags.jpg (file) | 42 KB | Ozborn@uab.edu | SAM format flags | 1 | |
19:40, 15 September 2011 | FastQTrimmerRun.jpg (file) | 23 KB | Ozborn@uab.edu | CMV 21950R being trimmed from 3' | 1 | |
19:25, 15 September 2011 | DrawQualityScoreBoxplot.jpg (file) | 10 KB | Ozborn@uab.edu | Run box plot | 2 | |
19:21, 15 September 2011 | QualityStatsResults.jpg (file) | 27 KB | Ozborn@uab.edu | 1 | ||
19:17, 15 September 2011 | RunComputeQualityStats.jpg (file) | 9 KB | Ozborn@uab.edu | 1 | ||
18:47, 15 September 2011 | FastQCRunSettings.jpg (file) | 22 KB | Ozborn@uab.edu | 1 | ||
18:08, 15 September 2011 | DataLibraryVacWRFastQ.jpg (file) | 56 KB | Ozborn@uab.edu | 1 | ||
15:55, 15 September 2011 | PileupFiltering100Reads.jpg (file) | 45 KB | Ozborn@uab.edu | Pileup run settings for Vaccinia WR | 1 | |
05:11, 15 September 2011 | FilterRunVacWR.jpg (file) | 13 KB | Ozborn@uab.edu | How to filter a SAM file for SNPs versus reference | 1 | |
04:21, 15 September 2011 | SNPEffResults.jpg (file) | 16 KB | Ozborn@uab.edu | SNP Results for Vaccinia WR | 1 | |
04:18, 15 September 2011 | SNPEffCoverage.jpg (file) | 69 KB | Ozborn@uab.edu | For a vaccinia WR | 1 | |
03:45, 15 September 2011 | SNPEff.jpg (file) | 54 KB | Ozborn@uab.edu | SNPEff run settings | 1 | |
03:08, 15 September 2011 | GeneratePileup.jpg (file) | 56 KB | Ozborn@uab.edu | Generate pileup for Vaccinia, call consensus | 1 | |
22:35, 14 September 2011 | Sam2bam.jpg (file) | 12 KB | Ozborn@uab.edu | Conversion of SAM file to BAM | 1 | |
22:35, 14 September 2011 | Flagstat.jpg (file) | 14 KB | Ozborn@uab.edu | Flag stat on BAM files | 1 | |
21:52, 14 September 2011 | Bwa run cmv 227r.jpg (file) | 52 KB | Ozborn@uab.edu | BWA run of VAC WR CMV 227R | 1 | |
21:33, 14 September 2011 | Bwa run cmv 21950r.jpg (file) | 49 KB | Ozborn@uab.edu | Running BWA on CMV 21950R in UAB Galaxy | 1 | |
21:08, 14 September 2011 | Cmv21950r 3 1 original boxplot.jpg (file) | 60 KB | Ozborn@uab.edu | 2 | ||
20:58, 14 September 2011 | Cmv21950r 3 1 trimmed boxplot.jpg (file) | 58 KB | Ozborn@uab.edu | CMV 21950R after trimming one base off the end. | 1 | |
20:25, 14 September 2011 | ComputeQualityStatsCMV21950R 3 1.jpg (file) | 86 KB | Ozborn@uab.edu | Image of running computation of quality stats | 1 | |
22:31, 13 September 2011 | CMV VAC WR 3 2 base quality.jpg (file) | 57 KB | Ozborn@uab.edu | CMV_VAC_WR_3_2 box and whiskers plot from FastQC | 1 | |
21:31, 13 September 2011 | DataType.jpg (file) | 49 KB | Ozborn@uab.edu | Data attributes for a vaccinia virus fastq file from the history pane. | 1 | |
21:29, 13 September 2011 | Ha gsl insert group.png (file) | 79 KB | Curtish@uab.edu | Example insert fragment length file from HudsonAlpha GSL | 1 | |
21:26, 13 September 2011 | HistoryPane.jpg (file) | 25 KB | Ozborn@uab.edu | What your history pane should look like after linking in the data. | 1 | |
17:51, 13 September 2011 | UploadLinkDataFilesGUI.jpg (file) | 98 KB | Ozborn@uab.edu | Picture of linking in directory of files to use in Galaxy | 1 | |
19:52, 9 September 2011 | Rcday2011-flyer.pdf (file) | 43 KB | Ppreddy@uab.edu | 2011 Research Computing Day (Sep 15) and HPC Bootcamp (Sep 16) flyer | 1 | |
16:19, 9 September 2011 | CI agenda 15Sept2011.pdf (file) | 98 KB | Jpr@uab.edu | Research Computing Day September 15, 2011, Agenda Handout | 1 | |
14:30, 7 September 2011 | Cheaha parallel config.png (file) | 96 KB | Tanthony@uab.edu | new version without Thomas Anthony in the data location path | 2 | |
14:17, 7 September 2011 | 2011 config mngr.png (file) | 142 KB | Tanthony@uab.edu | Maltab config manager new.. R2011 a | 1 | |
14:15, 7 September 2011 | Matlab-configuration-manager.jpg (file) | 60 KB | Tanthony@uab.edu | new version of config manager R2011a | 2 | |
14:10, 7 September 2011 | Validation.png (file) | 62 KB | Tanthony@uab.edu | new version of validation | 2 | |
15:08, 24 August 2011 | HighAvailabilityOverview-MySQL-HA-Solutions-20110823.pdf (file) | 127 KB | Ppreddy@uab.edu | Overview of HA - components, solutions, and environments. Also has notes regarding each of the components of HA | 1 | |
18:31, 26 July 2011 | Neuroimaging.jpg (file) | 51 KB | Nhutche@uab.edu | 1 | ||
16:45, 15 July 2011 | Developing-uab-cloud.pdf (file) | 1.95 MB | Jpr@uab.edu | UAB CI Day 2010, Developing the UAB Cloud presentation | 1 | |
16:41, 15 July 2011 | Uab-research-core-day-2010-horz-final.pdf (file) | 5.11 MB | Jpr@uab.edu | Poster from UAB Research Core Day highlighting UAB IT Research Computing Support | 1 | |
18:15, 14 June 2011 | Gromacs benchmark img3 Gromacs ns.png (file) | 19 KB | Tanthony@uab.edu | Page: Gromacs Benchmark, image 3 Ns/day speedup GFLops Cheaha DMC and Biowulf | 1 |