2011 Research Computing Day Agenda: Difference between revisions
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* 8:30 - 9:00 Registration | * 8:30 - 9:00 Registration | ||
* 9:00 - 9:05 Welcome and Overview, David Shealy, PhD | * 9:00 - 9:05 Welcome and Overview [[Media:Agenda UAB RCDay2011 15Sept2011.pdf|(pdf)]], David Shealy, PhD | ||
** 9:10 - 9:45 ''Sustaining - and Growing - Research Computing Services at a Research I University'', Ruth Marinshaw, Assistant Vice Chancellor, Research Computing, Information Technology Service, University of North Carolina, E-mail: ruth_marinshaw@unc.edu, Web: http://its.unc.edu/Research/index.htm | ** 9:10 - 9:45 [[Media:UAB_RCDay_15September2011_UNC_Research_Computing.pdf|''Sustaining - and Growing - Research Computing Services at a Research I University'' (pdf)]], Ruth Marinshaw, Assistant Vice Chancellor, Research Computing, Information Technology Service, University of North Carolina, E-mail: ruth_marinshaw@unc.edu, Web: http://its.unc.edu/Research/index.htm | ||
** 9:45 - 10:20 ''Galaxy: A Web-based Platform for Accessible, Reproducible, and Transparent High-throughput Biology'', Jeremy Goecks, PhD, Research Fellow in the Taylor Lab at Emory University, E-mail: jeremy.goecks@emory.edu, Web: | ** 9:45 - 10:20 [[Media:Goecks-uab-2011.pdf|''Galaxy: A Web-based Platform for Accessible, Reproducible, and Transparent High-throughput Biology'' (pdf)]], Jeremy Goecks, PhD, Research Fellow in the Taylor Lab at Emory University, E-mail: jeremy.goecks@emory.edu, Web: http://bx.mathcs.emory.edu/ | ||
* 10:25 - 10:45 Coffee Break | * 10:25 - 10:45 Coffee Break | ||
**10:45 - 11:15 ''UAB IT Research Computing Services Update'', Bob Cloud, David Shealy | **10:45 - 11:15 [[Media:Rcday2011-uabitrc-update.pdf|''UAB IT Research Computing Services Update'' (pdf)]], John-Paul Robinson, Bob Cloud, David Shealy | ||
**11:15 - 11:45 ''UAB IT Strategic Plan for Research Community'', E. Douglas Rigney, PhD, PE, Interim Vice President for Information Technology, Professor, Biomedical Engineering | **11:15 - 11:45 [[Media:Dr. Rigney -UAB IT Research Computing Day.pdf|''UAB IT Strategic Plan for Research Community'' (pdf)]], E. Douglas Rigney, PhD, PE, Interim Vice President for Information Technology, Professor, Biomedical Engineering | ||
* 11:45 - 1:15 Poster Session and Lunch - size and location to be determine | * 11:45 - 1:15 Poster Session and Lunch - size and location to be determine | ||
* 1:15 - 2:30 Biomedical Sciences and Engineering Applications Session | * 1:15 - 2:30 Biomedical Sciences and Engineering Applications Session | ||
** 1:15 - 1:40pm: ''Genotype calling for next-gen sequencing data,'' Degui Zhi, PhD, Assistant Professor, Department of Biostatistics, University of Alabama at Birmingham. E-mail: dzhi@ms.soph.uab.edu . | ** 1:15 - 1:40pm: ''Genotype calling for next-gen sequencing data,'' Degui Zhi, PhD, Assistant Professor, Department of Biostatistics, University of Alabama at Birmingham. E-mail: dzhi@ms.soph.uab.edu . | ||
** 1:40 - 2:05: ''Preferred Odorant Binding Sites and Olfactory Receptor Function | ** 1:40 - 2:05: [[Media:Crasto SIM 01 21 11.pdf|''Preferred Odorant Binding Sites and Olfactory Receptor Function'' (pdf)]], Chiquito J. Crasto, PhD, Assistant Professor, Division of Research, Department of Genetics, Univeristy of Alabama at Birmingham. Tele: 205-996-7083; E-mail: chiquito@uab.edu . | ||
** 2:05 - 2:35: ''Challenges in data acquisition, storage and processing for NIH funded studies | ** 2:05 - 2:35: [[Media:StephenBarnesIT talk 9-15-11.pdf|''Challenges in data acquisition, storage and processing for NIH funded studies'' (pdf)]], Stephen Barnes, PhD, Professor of Pharmacology, University of Alabama at Birmingham. Tele: 205-934-7117; FAX: 205-934-6944; E-mail: sbarnes@uab.edu. | ||
** 2:35 - 3:05pm: ''The Web of Linked Data and Informatics for the One Computer,'' Jonas S Almeida,PhD, Professor, Director of Div. Informatics, Dept Pathology, University of Alabama at Birmingham. Tel: (205) 975-3286, email: jalmeida@uab.edu, cv: http://jonasalmeida.info | ** 2:35 - 3:05pm: ''The Web of Linked Data and Informatics for the One Computer,'' Jonas S Almeida,PhD, Professor, Director of Div. Informatics, Dept Pathology, University of Alabama at Birmingham. Tel: (205) 975-3286, email: jalmeida@uab.edu, cv: http://jonasalmeida.info | ||
* 3:05 - 3:20 Coffee Break | * 3:05 - 3:20 Coffee Break | ||
* 3:20 - 4:20 Science and Engineering Applications Session | * 3:20 - 4:20 Science and Engineering Applications Session | ||
** 3:20 - 3:40: ''TAH - Update on UAB MATLAB campus license | ** 3:20 - 3:40: [[Media:MATLAB-TAHupdate 3.20pm 15Sept2011 FINAL.pdf|''TAH - Update on UAB MATLAB campus license'' (pdf)]], David L Shealy, PhD, Professor and Chair, Dept Physics, University of Alabama at Birmingham. Tele: (205)934-8068; FAX (205)934-8042; E-Mail: dls@uab.edu. | ||
** 3:40 - 4:00: ''Computing in network modeling,'' Xujing Wang, Associate Professor, Dept Physics, University of Alabama at Birmingham. E-mail: xujingw@uab.edu | ** 3:40 - 4:00: ''Computing in network modeling,'' Xujing Wang, Associate Professor, Dept Physics, University of Alabama at Birmingham. E-mail: xujingw@uab.edu | ||
** 4:00 - 4:20: ''Improving Application Performance,'' John-Paul Robinson, System Architect Research Computing, IT Research Computing, LHL 164, zip 0013; Office telephone number: (205) 975-0124; Facsimile telephone number: (205) 975-2855; E-mail: jpr@uab.edu and Thomas Anthony, IT Intern and Graduate Student in Computer Engineering; E-Mail: tanthony@uab.edu ; Tele: (205) 410-8698. | ** 4:00 - 4:20: ''Improving Application Performance,'' John-Paul Robinson, System Architect Research Computing, IT Research Computing, LHL 164, zip 0013; Office telephone number: (205) 975-0124; Facsimile telephone number: (205) 975-2855; E-mail: jpr@uab.edu and Thomas Anthony, IT Intern and Graduate Student in Computer Engineering; E-Mail: tanthony@uab.edu ; Tele: (205) 410-8698. | ||
Latest revision as of 18:31, 19 September 2011
AGENDA for UAB 2011 Research Computing Day
September 15, 2011
UAB Hill University Center Auditorium
- 8:30 - 9:00 Registration
- 9:00 - 9:05 Welcome and Overview (pdf), David Shealy, PhD
- 9:10 - 9:45 Sustaining - and Growing - Research Computing Services at a Research I University (pdf), Ruth Marinshaw, Assistant Vice Chancellor, Research Computing, Information Technology Service, University of North Carolina, E-mail: ruth_marinshaw@unc.edu, Web: http://its.unc.edu/Research/index.htm
- 9:45 - 10:20 Galaxy: A Web-based Platform for Accessible, Reproducible, and Transparent High-throughput Biology (pdf), Jeremy Goecks, PhD, Research Fellow in the Taylor Lab at Emory University, E-mail: jeremy.goecks@emory.edu, Web: http://bx.mathcs.emory.edu/
- 10:25 - 10:45 Coffee Break
- 10:45 - 11:15 UAB IT Research Computing Services Update (pdf), John-Paul Robinson, Bob Cloud, David Shealy
- 11:15 - 11:45 UAB IT Strategic Plan for Research Community (pdf), E. Douglas Rigney, PhD, PE, Interim Vice President for Information Technology, Professor, Biomedical Engineering
- 11:45 - 1:15 Poster Session and Lunch - size and location to be determine
- 1:15 - 2:30 Biomedical Sciences and Engineering Applications Session
- 1:15 - 1:40pm: Genotype calling for next-gen sequencing data, Degui Zhi, PhD, Assistant Professor, Department of Biostatistics, University of Alabama at Birmingham. E-mail: dzhi@ms.soph.uab.edu .
- 1:40 - 2:05: Preferred Odorant Binding Sites and Olfactory Receptor Function (pdf), Chiquito J. Crasto, PhD, Assistant Professor, Division of Research, Department of Genetics, Univeristy of Alabama at Birmingham. Tele: 205-996-7083; E-mail: chiquito@uab.edu .
- 2:05 - 2:35: Challenges in data acquisition, storage and processing for NIH funded studies (pdf), Stephen Barnes, PhD, Professor of Pharmacology, University of Alabama at Birmingham. Tele: 205-934-7117; FAX: 205-934-6944; E-mail: sbarnes@uab.edu.
- 2:35 - 3:05pm: The Web of Linked Data and Informatics for the One Computer, Jonas S Almeida,PhD, Professor, Director of Div. Informatics, Dept Pathology, University of Alabama at Birmingham. Tel: (205) 975-3286, email: jalmeida@uab.edu, cv: http://jonasalmeida.info
- 3:05 - 3:20 Coffee Break
- 3:20 - 4:20 Science and Engineering Applications Session
- 3:20 - 3:40: TAH - Update on UAB MATLAB campus license (pdf), David L Shealy, PhD, Professor and Chair, Dept Physics, University of Alabama at Birmingham. Tele: (205)934-8068; FAX (205)934-8042; E-Mail: dls@uab.edu.
- 3:40 - 4:00: Computing in network modeling, Xujing Wang, Associate Professor, Dept Physics, University of Alabama at Birmingham. E-mail: xujingw@uab.edu
- 4:00 - 4:20: Improving Application Performance, John-Paul Robinson, System Architect Research Computing, IT Research Computing, LHL 164, zip 0013; Office telephone number: (205) 975-0124; Facsimile telephone number: (205) 975-2855; E-mail: jpr@uab.edu and Thomas Anthony, IT Intern and Graduate Student in Computer Engineering; E-Mail: tanthony@uab.edu ; Tele: (205) 410-8698.
- 4:30pm -- closing remarks/discussions of issues that need to be resolved.