2011 Research Computing Day Agenda

AGENDA for UAB 2011 Research Computing Day

September 15, 2011

UAB Hill University Center Auditorium

• 8:30 - 9:00 Registration
• 9:00 - 9:05 Welcome and Overview (pdf), David Shealy, PhD
  • 9:10 - 9:45 Sustaining - and Growing - Research Computing Services at a Research I University (pdf), Ruth Marinshaw, Assistant Vice Chancellor, Research Computing, Information Technology Service, University of North Carolina, E-mail: ruth_marinshaw@unc.edu, Web: http://its.unc.edu/Research/index.htm
  • 9:45 - 10:20 Galaxy: A Web-based Platform for Accessible, Reproducible, and Transparent High-throughput Biology (pdf), Jeremy Goecks, PhD, Research Fellow in the Taylor Lab at Emory University, E-mail: jeremy.goecks@emory.edu, Web: http://bx.mathcs.emory.edu/
• 10:25 - 10:45 Coffee Break
  • 10:45 - 11:15 UAB IT Research Computing Services Update (pdf), John-Paul Robinson, Bob Cloud, David Shealy
  • 11:15 - 11:45 UAB IT Strategic Plan for Research Community (pdf), E. Douglas Rigney, PhD, PE, Interim Vice President for Information Technology, Professor, Biomedical Engineering
• 11:45 - 1:15 Poster Session and Lunch - size and location to be determine
• 1:15 - 2:30 Biomedical Sciences and Engineering Applications Session
  • 1:15 - 1:40pm: Genotype calling for next-gen sequencing data, Degui Zhi, PhD, Assistant Professor, Department of Biostatistics, University of Alabama at Birmingham. E-mail: dzhi@ms.soph.uab.edu .
  • 1:40 - 2:05: Preferred Odorant Binding Sites and Olfactory Receptor Function (pdf), Chiquito J. Crasto, PhD, Assistant Professor, Division of Research, Department of Genetics, Univeristy of Alabama at Birmingham. Tele: 205-996-7083; E-mail: chiquito@uab.edu .
  • 2:05 - 2:35: Challenges in data acquisition, storage and processing for NIH funded studies (pdf), Stephen Barnes, PhD, Professor of Pharmacology, University of Alabama at Birmingham. Tele: 205-934-7117; FAX: 205-934-6944; E-mail: sbarnes@uab.edu.
  • 2:35 - 3:05pm: The Web of Linked Data and Informatics for the One Computer, Jonas S Almeida,PhD, Professor, Director of Div. Informatics, Dept Pathology, University of Alabama at Birmingham. Tel: (205) 975-3286, email: jalmeida@uab.edu, cv: http://jonasalmeida.info
• 3:05 - 3:20 Coffee Break
• 3:20 - 4:20 Science and Engineering Applications Session
  • 3:20 - 3:40: TAH - Update on UAB MATLAB campus license (pdf), David L Shealy, PhD, Professor and Chair, Dept Physics, University of Alabama at Birmingham. Tele: (205)934-8068; FAX (205)934-8042; E-Mail: dls@uab.edu.
  • 3:40 - 4:00: Computing in network modeling, Xujing Wang, Associate Professor, Dept Physics, University of Alabama at Birmingham. E-mail: xujingw@uab.edu
  • 4:00 - 4:20: Improving Application Performance, John-Paul Robinson, System Architect Research Computing, IT Research Computing, LHL 164, zip 0013; Office telephone number: (205) 975-0124; Facsimile telephone number: (205) 975-2855; E-mail: jpr@uab.edu and Thomas Anthony, IT Intern and Graduate Student in Computer Engineering; E-Mail: tanthony@uab.edu ; Tele: (205) 410-8698.
• 4:30pm -- closing remarks/discussions of issues that need to be resolved.