Uploads by Ozborn@uab.edu
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 03:22, 15 January 2020 | JupyterCustomEnv.jpeg (file) | Error creating thumbnail: File missing |
75 KB | File showing what a custom conda environment looks like in Jupyter On Demand | 1 |
| 02:07, 28 October 2019 | LaunchJupyter.png (file) | Error creating thumbnail: File missing |
12 KB | Button to press. | 1 |
| 00:03, 28 October 2019 | PascalNodes.png (file) | Error creating thumbnail: File missing |
49 KB | Arguments for getting a GPU | 1 |
| 00:03, 28 October 2019 | TestPytorch.png (file) | Error creating thumbnail: File missing |
73 KB | Shows successful pytorch run on pascalnodes | 1 |
| 23:57, 27 October 2019 | PascalNodes.pdf (file) |  |
34 KB | Shows arguments for starting a job using PascaleNodes to get a GPU | 1 |
| 23:57, 27 October 2019 | TestPytorch.pdf (file) | |
51 KB | Shows success test of PyTorch on Jupter Notebook Oct 2019 | 1 |
| 15:29, 17 September 2019 | JupyterNotebookGPUEnvironment.png (file) | Error creating thumbnail: File missing |
131 KB | Arguments for using GPUs | 1 |
| 15:15, 17 September 2019 | JupyterNotebookStart.png (file) | Error creating thumbnail: File missing |
184 KB | Image of starting Jupyter Notebook on cheaha | 1 |
| 06:17, 16 September 2011 | Fastqc summary.jpg (file) |  |
31 KB | 1 | |
| 21:50, 15 September 2011 | SNPEffResultTabular.jpg (file) |  |
18 KB | 1 | |
| 21:36, 15 September 2011 | CMV21950RvsVACWR CompareData.jpg (file) |  |
20 KB | 1 | |
| 21:14, 15 September 2011 | GalaxyTutorialSharedLibrary.jpg (file) |  |
44 KB | 1 | |
| 20:06, 15 September 2011 | SamBamFileFormatFlags.jpg (file) |  |
42 KB | SAM format flags | 1 |
| 19:40, 15 September 2011 | FastQTrimmerRun.jpg (file) |  |
23 KB | CMV 21950R being trimmed from 3' | 1 |
| 19:25, 15 September 2011 | DrawQualityScoreBoxplot.jpg (file) |  |
10 KB | Run box plot | 2 |
| 19:21, 15 September 2011 | QualityStatsResults.jpg (file) |  |
27 KB | 1 | |
| 19:17, 15 September 2011 | RunComputeQualityStats.jpg (file) |  |
9 KB | 1 | |
| 18:47, 15 September 2011 | FastQCRunSettings.jpg (file) |  |
22 KB | 1 | |
| 18:08, 15 September 2011 | DataLibraryVacWRFastQ.jpg (file) |  |
56 KB | 1 | |
| 15:55, 15 September 2011 | PileupFiltering100Reads.jpg (file) |  |
45 KB | Pileup run settings for Vaccinia WR | 1 |
| 05:11, 15 September 2011 | FilterRunVacWR.jpg (file) |  |
13 KB | How to filter a SAM file for SNPs versus reference | 1 |
| 04:21, 15 September 2011 | SNPEffResults.jpg (file) |  |
16 KB | SNP Results for Vaccinia WR | 1 |
| 04:18, 15 September 2011 | SNPEffCoverage.jpg (file) |  |
69 KB | For a vaccinia WR | 1 |
| 03:45, 15 September 2011 | SNPEff.jpg (file) |  |
54 KB | SNPEff run settings | 1 |
| 03:08, 15 September 2011 | GeneratePileup.jpg (file) |  |
56 KB | Generate pileup for Vaccinia, call consensus | 1 |
| 22:35, 14 September 2011 | Sam2bam.jpg (file) |  |
12 KB | Conversion of SAM file to BAM | 1 |
| 22:35, 14 September 2011 | Flagstat.jpg (file) |  |
14 KB | Flag stat on BAM files | 1 |
| 21:52, 14 September 2011 | Bwa run cmv 227r.jpg (file) |  |
52 KB | BWA run of VAC WR CMV 227R | 1 |
| 21:33, 14 September 2011 | Bwa run cmv 21950r.jpg (file) |  |
49 KB | Running BWA on CMV 21950R in UAB Galaxy | 1 |
| 21:08, 14 September 2011 | Cmv21950r 3 1 original boxplot.jpg (file) |  |
60 KB | 2 | |
| 20:58, 14 September 2011 | Cmv21950r 3 1 trimmed boxplot.jpg (file) |  |
58 KB | CMV 21950R after trimming one base off the end. | 1 |
| 20:25, 14 September 2011 | ComputeQualityStatsCMV21950R 3 1.jpg (file) |  |
86 KB | Image of running computation of quality stats | 1 |
| 22:31, 13 September 2011 | CMV VAC WR 3 2 base quality.jpg (file) |  |
57 KB | CMV_VAC_WR_3_2 box and whiskers plot from FastQC | 1 |
| 21:31, 13 September 2011 | DataType.jpg (file) |  |
49 KB | Data attributes for a vaccinia virus fastq file from the history pane. | 1 |
| 21:26, 13 September 2011 | HistoryPane.jpg (file) |  |
25 KB | What your history pane should look like after linking in the data. | 1 |
| 17:51, 13 September 2011 | UploadLinkDataFilesGUI.jpg (file) |  |
98 KB | Picture of linking in directory of files to use in Galaxy | 1 |
