NgsCctsBuildBwa

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Attention: Research Computing Documentation has Moved
https://docs.rc.uab.edu/


Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.


As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

Building BWA for /share/apps/ngs-ccts

Downloading and building BWA 

BWA_VER=bwa-0.6.2
wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
tar jxvf ${BWA_VER}.tar.bz2
rm ${BWA_VER}.tar*
cd ${BWA_VER}
make
cd ..
ln -s `pwd`/${BWA_VER} latest/bwa
Retrieved from "https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&oldid=4290"