GTOOL

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GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE.

GTOOL can be used to:

  • generate subsets of genotype data,
  • to convert genotype data between the PED file format and the file format used by SNPTEST and IMPUTE,
  • merge genotype datasets together,
  • orient genotype data according to a strand file.

Project website: http://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html

Load SGE module

The following Modules files should be loaded for this package:

module load gtool/gtool
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