User contributions for Ozborn@uab.edu
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15 September 2011
- 18:3018:30, 15 September 2011 diff hist +217 Galaxy →Available datasets: Added new datasets
- 18:2118:21, 15 September 2011 diff hist +368 Galaxy DNA-Seq Tutorial No edit summary
- 18:0918:09, 15 September 2011 diff hist +66 Galaxy DNA-Seq Tutorial →Linking to data
- 18:0818:08, 15 September 2011 diff hist 0 N File:DataLibraryVacWRFastQ.jpg No edit summary current
- 15:5615:56, 15 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial Pileup filtering
- 15:5515:55, 15 September 2011 diff hist +35 N File:PileupFiltering100Reads.jpg Pileup run settings for Vaccinia WR current
- 05:1305:13, 15 September 2011 diff hist +75 Galaxy DNA-Seq Tutorial Filtering SNPs
- 05:1105:11, 15 September 2011 diff hist +50 N File:FilterRunVacWR.jpg How to filter a SAM file for SNPs versus reference current
- 04:2204:22, 15 September 2011 diff hist +32 Galaxy DNA-Seq Tutorial No edit summary
- 04:2104:21, 15 September 2011 diff hist +27 N File:SNPEffResults.jpg SNP Results for Vaccinia WR current
- 04:2004:20, 15 September 2011 diff hist +141 Galaxy DNA-Seq Tutorial No edit summary
- 04:1804:18, 15 September 2011 diff hist +17 N File:SNPEffCoverage.jpg For a vaccinia WR current
- 04:1704:17, 15 September 2011 diff hist +214 Galaxy DNA-Seq Tutorial SNPEff separate section
- 03:4703:47, 15 September 2011 diff hist +78 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:4503:45, 15 September 2011 diff hist +19 N File:SNPEff.jpg SNPEff run settings current
- 03:3803:38, 15 September 2011 diff hist +127 Galaxy DNA-Seq Tutorial →BAM Conversion
- 03:3403:34, 15 September 2011 diff hist +153 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0903:09, 15 September 2011 diff hist +107 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0803:08, 15 September 2011 diff hist +44 N File:GeneratePileup.jpg Generate pileup for Vaccinia, call consensus current
- 03:0603:06, 15 September 2011 diff hist +20 Galaxy DNA-Seq Tutorial →Looking at differences with SNPEff
14 September 2011
- 22:3622:36, 14 September 2011 diff hist +22 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +29 N File:Sam2bam.jpg Conversion of SAM file to BAM current
- 22:3522:35, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +22 N File:Flagstat.jpg Flag stat on BAM files current
- 21:5321:53, 14 September 2011 diff hist −1 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:5221:52, 14 September 2011 diff hist +26 N File:Bwa run cmv 227r.jpg BWA run of VAC WR CMV 227R current
- 21:3321:33, 14 September 2011 diff hist +31 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:3321:33, 14 September 2011 diff hist +39 N File:Bwa run cmv 21950r.jpg Running BWA on CMV 21950R in UAB Galaxy current
- 21:0821:08, 14 September 2011 diff hist 0 File:Cmv21950r 3 1 original boxplot.jpg uploaded a new version of "File:Cmv21950r 3 1 original boxplot.jpg" current
- 21:0521:05, 14 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 21:0421:04, 14 September 2011 diff hist 0 N File:DrawQualityScoreBoxplot.jpg No edit summary
- 20:5920:59, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial →Performing cleanup
- 20:5820:58, 14 September 2011 diff hist +47 N File:Cmv21950r 3 1 trimmed boxplot.jpg CMV 21950R after trimming one base off the end. current
- 20:3320:33, 14 September 2011 diff hist +43 Galaxy DNA-Seq Tutorial Adding pre-trim boxplot
- 20:3220:32, 14 September 2011 diff hist +49 N File:Cmv21950r 3 1 original boxplot.jpg Original boxplot before trimming of Vac WR 21950R
- 20:2720:27, 14 September 2011 diff hist +49 Galaxy DNA-Seq Tutorial Adding computation of qualitys stats
- 20:2520:25, 14 September 2011 diff hist +45 N File:ComputeQualityStatsCMV21950R 3 1.jpg Image of running computation of quality stats current
13 September 2011
- 22:3422:34, 13 September 2011 diff hist +212 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 22:3122:31, 13 September 2011 diff hist +48 N File:CMV VAC WR 3 2 base quality.jpg CMV_VAC_WR_3_2 box and whiskers plot from FastQC current
- 22:3022:30, 13 September 2011 diff hist +396 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 21:4621:46, 13 September 2011 diff hist +619 Galaxy DNA-Seq Tutorial Formatting data
- 21:3121:31, 13 September 2011 diff hist +70 N File:DataType.jpg Data attributes for a vaccinia virus fastq file from the history pane. current
- 21:2921:29, 13 September 2011 diff hist +362 Galaxy DNA-Seq Tutorial →Linking to data
- 21:2621:26, 13 September 2011 diff hist +66 N File:HistoryPane.jpg What your history pane should look like after linking in the data. current
- 19:3419:34, 13 September 2011 diff hist +437 Galaxy DNA-Seq Tutorial Linking in WR data
- 19:0519:05, 13 September 2011 diff hist +219 UAB Galaxy Workshop Tutorial No edit summary
- 19:0119:01, 13 September 2011 diff hist −48 UAB Galaxy Workshop Tutorial No edit summary
- 18:5718:57, 13 September 2011 diff hist +316 N Galaxy DNA-Seq Tutorial Created page with "= Galaxy DNA-Seq Tutorial = == Linking to data == == Grommin Data == == Assessing the quality of the data == == Performing cleanup == == Short read alignment to referenc..."
- 18:5518:55, 13 September 2011 diff hist −243 UAB Galaxy Workshop Tutorial Moving DNA-Seq and RNA-Seq to their own pages
- 17:5917:59, 13 September 2011 diff hist +123 UAB Galaxy Workshop Tutorial →Getting data into Galaxy: Added links to data uploading, still need cleanup.