User contributions for Ozborn@uab.edu
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28 August 2020
- 19:0319:03, 28 August 2020 diff hist +861 Jupyter More information on custom building conda environments on cheahea
21 April 2020
- 16:4116:41, 21 April 2020 diff hist +20 m UAB Openstack Tutorial →Create Application Credentials current
28 February 2020
- 17:2917:29, 28 February 2020 diff hist +526 m UAB Openstack Tutorial Add info on getting creds
- 17:1717:17, 28 February 2020 diff hist +3,373 N UAB Openstack Tutorial Initial Page Creation
8 February 2020
- 01:1901:19, 8 February 2020 diff hist +141 m Jupyter →Build your conda environment: How to update
7 February 2020
- 02:3302:33, 7 February 2020 diff hist +12 m Jupyter --no-builds option
15 January 2020
- 03:2603:26, 15 January 2020 diff hist +64 Jupyter →Build your conda environment
- 03:2503:25, 15 January 2020 diff hist +85 Jupyter →Build your conda environment
- 03:2203:22, 15 January 2020 diff hist +76 N File:JupyterCustomEnv.jpeg File showing what a custom conda environment looks like in Jupyter On Demand current
- 03:2103:21, 15 January 2020 diff hist +55 Jupyter →Set up your cheaha .condarc file
- 03:2103:21, 15 January 2020 diff hist +2 Jupyter →Add ipkernel to your conda environment
- 03:2003:20, 15 January 2020 diff hist +37 Jupyter →Export YAML file containing your environment to cheaha
- 03:2003:20, 15 January 2020 diff hist +84 Jupyter →Export YAML file containing your environment to cheaha
- 03:1903:19, 15 January 2020 diff hist +257 Jupyter →Adding Custom Conda Environments to Jupyter
- 03:1703:17, 15 January 2020 diff hist +667 Jupyter Added Custom Jupyter Conda Environments
28 October 2019
- 02:0802:08, 28 October 2019 diff hist +33 Jupyter →Jupyter On Demand
- 02:0702:07, 28 October 2019 diff hist +16 N File:LaunchJupyter.png Button to press. current
- 02:0202:02, 28 October 2019 diff hist +43 Jupyter Adding numbering
- 01:5701:57, 28 October 2019 diff hist +187 Jupyter →Jupyter On Demand
- 00:0500:05, 28 October 2019 diff hist +60 Jupyter Updated GPU instructions
- 00:0300:03, 28 October 2019 diff hist +27 N File:PascalNodes.png Arguments for getting a GPU current
- 00:0300:03, 28 October 2019 diff hist +43 N File:TestPytorch.png Shows successful pytorch run on pascalnodes current
27 October 2019
- 23:5723:57, 27 October 2019 diff hist +66 N File:PascalNodes.pdf Shows arguments for starting a job using PascaleNodes to get a GPU current
- 23:5723:57, 27 October 2019 diff hist +57 N File:TestPytorch.pdf Shows success test of PyTorch on Jupter Notebook Oct 2019 current
24 October 2019
- 16:1916:19, 24 October 2019 diff hist +17 Jupyter →Jupyter On Demand
- 16:1716:17, 24 October 2019 diff hist +104 Jupyter →Jupyter by Proxy: Warning added
- 16:1616:16, 24 October 2019 diff hist +113 m Jupyter →Jupyter On Demand: Cleanup
- 16:1416:14, 24 October 2019 diff hist +46 Jupyter →Jupyter On Demand
22 October 2019
- 16:3116:31, 22 October 2019 diff hist 0 m Jupyter →Jupyter On Demand
- 16:2616:26, 22 October 2019 diff hist +1 m Jupyter →Jupyter On Demand
- 16:1516:15, 22 October 2019 diff hist +9 m Jupyter Updated Anaconda environment
17 September 2019
- 15:3115:31, 17 September 2019 diff hist +57 Jupyter GPU environment description
- 15:2915:29, 17 September 2019 diff hist +24 N File:JupyterNotebookGPUEnvironment.png Arguments for using GPUs current
- 15:2915:29, 17 September 2019 diff hist +94 Jupyter →Jupyter On Demand
- 15:2415:24, 17 September 2019 diff hist +168 Jupyter →Jupyter On Demand: Cleanup starting Jupyter
- 15:1515:15, 17 September 2019 diff hist +44 N File:JupyterNotebookStart.png Image of starting Jupyter Notebook on cheaha current
- 15:1315:13, 17 September 2019 diff hist +172 m Jupyter →Jupyter On Demand: - environment arguments
31 August 2019
- 22:2122:21, 31 August 2019 diff hist +121 Jupyter On Demand added
30 January 2019
- 17:3817:38, 30 January 2019 diff hist +25 PheDRS →NLP Discovered Patients current
- 17:3117:31, 30 January 2019 diff hist +366 PheDRS →Evidence Code Ontology: Updating NLP
- 17:1917:19, 30 January 2019 diff hist +529 PheDRS →Evidence Code Ontology
- 16:5916:59, 30 January 2019 diff hist +698 PheDRS →Developer Guide to PheDRS Data Loading Criteria: Updating vocabulary meaning.
24 January 2019
- 20:3920:39, 24 January 2019 diff hist +826 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation: Evidence Codes
- 20:2820:28, 24 January 2019 diff hist +5 m PheDRS →Installation / Setup: TODO
18 January 2019
- 20:1920:19, 18 January 2019 diff hist −80 m PheDRS →Developer Guide to PheDRS Data Loading Criteria
- 19:5419:54, 18 January 2019 diff hist +15 m PheDRS →Developer Guide to PheDRS Data Loading Criteria
- 19:5119:51, 18 January 2019 diff hist −65 PheDRS →Developer Guide for Registry Configuration Properties
- 19:4419:44, 18 January 2019 diff hist −153 m PheDRS →Developer Guide for Registry Configuration Properties
- 19:3819:38, 18 January 2019 diff hist −84 PheDRS →Developer Guide for Registry Configuration Properties
- 19:3319:33, 18 January 2019 diff hist +6,091 PheDRS →Developer Guide for Registry Configuration Properties
- 19:2219:22, 18 January 2019 diff hist +107 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation
- 19:1919:19, 18 January 2019 diff hist +708 PheDRS →Registry Configuration: Adding developer guide for registry configuration properties
- 17:0117:01, 18 January 2019 diff hist +53 m PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation
- 16:5716:57, 18 January 2019 diff hist +401 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation: Documentation Location
- 16:3916:39, 18 January 2019 diff hist +33 PheDRS →Phenotype Detection Registry System
17 January 2019
- 16:4816:48, 17 January 2019 diff hist +785 PheDRS →Phenotype Detection Registry System: Added roles
14 January 2019
- 22:4022:40, 14 January 2019 diff hist +187 PheDRS Placeholders for Content
- 21:2521:25, 14 January 2019 diff hist +2,240 PheDRS CVTERM Prop configuration added
- 19:5819:58, 14 January 2019 diff hist +338 N PheDRS Creation
1 November 2018
- 14:5514:55, 1 November 2018 diff hist −5 Jupyter →3. Copy notebook settings
- 14:5414:54, 1 November 2018 diff hist +352 Jupyter Detailing steps to starting Jupyter
19 October 2018
- 16:3916:39, 19 October 2018 diff hist +26 Jupyter →DeepNLP option
18 October 2018
- 15:3115:31, 18 October 2018 diff hist +227 Jupyter DeepNLP option
11 October 2018
- 19:5519:55, 11 October 2018 diff hist +205 Jupyter Additional information on Python_Virtual_Environment and Anaconda
4 October 2018
- 20:0220:02, 4 October 2018 diff hist +164 Jupyter Added memory heavy option
25 September 2018
- 23:0323:03, 25 September 2018 diff hist +731 N DeepNLP Create documentation for conda module current
12 September 2018
- 16:1616:16, 12 September 2018 diff hist +520 Jupyter Adding GPU info, cleanup
4 September 2018
- 23:0623:06, 4 September 2018 diff hist +71 Jupyter putty port forward link added
- 21:2021:20, 4 September 2018 diff hist +531 Jupyter Windows instructions for connecting and proxying from cheaha
2 September 2018
- 22:4422:44, 2 September 2018 diff hist +266 Jupyter IO data rate fix
- 02:1902:19, 2 September 2018 diff hist +17 m Jupyter Typo fix, bolding relevant bits
29 August 2018
- 16:3516:35, 29 August 2018 diff hist +305 Jupyter →Jupyter on Cheaha
- 16:2616:26, 29 August 2018 diff hist +290 Jupyter →Jupyter on Cheaha
22 August 2018
- 18:2818:28, 22 August 2018 diff hist +68 m Slurm Link to Jupyter Notebook
21 August 2018
- 19:4119:41, 21 August 2018 diff hist +1,028 Jupyter Description of how to run Jupyter Notebook interactively using Anaconda3/5.2.0
17 December 2012
- 21:1721:17, 17 December 2012 diff hist +1,118 NgsCctsBuildAbyss Notes on sucessfull compiling of abyss current
16 September 2011
- 14:1914:19, 16 September 2011 diff hist +73 Galaxy DNA-Seq Tutorial →Comparative Genomics current
- 14:1714:17, 16 September 2011 diff hist +36 Galaxy DNA-Seq Tutorial →Difference from consensus
- 14:1614:16, 16 September 2011 diff hist +13 Galaxy DNA-Seq Tutorial →SNPEff - Variation Summation (optional)
- 14:1514:15, 16 September 2011 diff hist −3 Galaxy DNA-Seq Tutorial →Comparative Genomics
- 14:1414:14, 16 September 2011 diff hist −3 Galaxy DNA-Seq Tutorial →Difference from consensus
- 14:1414:14, 16 September 2011 diff hist −2 Galaxy DNA-Seq Tutorial →Pileup Filter
- 14:1414:14, 16 September 2011 diff hist −2 Galaxy DNA-Seq Tutorial →Finding the Relevant SNPs versus Control
- 06:4606:46, 16 September 2011 diff hist +125 Galaxy DNA-Seq Tutorial →Pileup Filter
- 06:4506:45, 16 September 2011 diff hist +10 Galaxy DNA-Seq Tutorial →SNPEff - Variation Summation
- 06:4406:44, 16 September 2011 diff hist +304 Galaxy DNA-Seq Tutorial →Pileup
- 06:2906:29, 16 September 2011 diff hist +207 Galaxy DNA-Seq Tutorial →Results from SNPEff
- 06:2606:26, 16 September 2011 diff hist +88 Galaxy DNA-Seq Tutorial No edit summary
- 06:2206:22, 16 September 2011 diff hist +164 Galaxy DNA-Seq Tutorial →FastQC Results
- 06:1906:19, 16 September 2011 diff hist +8 Galaxy DNA-Seq Tutorial →FastQC Results
- 06:1706:17, 16 September 2011 diff hist 0 N File:Fastqc summary.jpg No edit summary current
- 06:1306:13, 16 September 2011 diff hist +3 Galaxy DNA-Seq Tutorial →Running FastQC
- 06:1206:12, 16 September 2011 diff hist +154 Galaxy DNA-Seq Tutorial →Metadata - Formatting and Grooming Data
- 05:5505:55, 16 September 2011 diff hist +194 Galaxy DNA-Seq Tutorial →Trimming Reads
- 05:4905:49, 16 September 2011 diff hist −7 Galaxy DNA-Seq Tutorial →Quality Control = Formatting and Grooming Data
- 05:4705:47, 16 September 2011 diff hist +109 Galaxy DNA-Seq Tutorial →Formatting and Grooming Data
- 03:4103:41, 16 September 2011 diff hist +148 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 02:5802:58, 16 September 2011 diff hist +1 Galaxy →Available datasets
- 02:5702:57, 16 September 2011 diff hist +2 Galaxy →Available datasets
15 September 2011
- 21:5321:53, 15 September 2011 diff hist +351 Galaxy DNA-Seq Tutorial No edit summary