User contributions for Curtish@uab.edu

21:5821:58, 9 October 2012 diff hist +58‎ NgsCctsBuildAbyss ‎No edit summary
21:5721:57, 9 October 2012 diff hist +96‎ NgsCctsBuildAbyss ‎No edit summary
21:5221:52, 9 October 2012 diff hist +928‎ N NgsCctsBuildAbyss ‎ Created page with " Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] Requires [sparsehash] TARGET_VER=sparsehash-2.0.2..."
21:1821:18, 9 October 2012 diff hist +229‎ NgsCcts ‎ →‎Short Read (denovo) Assemblers
21:1621:16, 9 October 2012 diff hist −5‎ NgsCcts ‎ →‎Short Read Aligners
21:1521:15, 9 October 2012 diff hist −3‎ NgsCcts ‎ →‎Short Read Aligners
21:1521:15, 9 October 2012 diff hist −6‎ NgsCcts ‎ →‎Short Read (denovo) Assemblers
21:1521:15, 9 October 2012 diff hist +111‎ NgsCcts ‎ →‎Short Read (denovo) Assemblers
21:0321:03, 9 October 2012 diff hist +277‎ N NgsCctsBuildVelvet ‎ Created page with " TARGET_VER=velvet_1.2.08 wget http://www.ebi.ac.uk/~zerbino/velvet/${TARGET_VER}.tgz tar xzvf ${TARGET_VER}.tgz rm ${TARGET_VER}.tgz cd ${TARGET_VER} Edit Makefile to c..."
20:5220:52, 9 October 2012 diff hist +29‎ N NgsCctsBuildBwa build ‎ Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa current
20:5220:52, 9 October 2012 diff hist 0‎ m NgsCctsBuildBwa ‎ Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa
20:4720:47, 9 October 2012 diff hist +393‎ N NgsCctsBuildBwa ‎ Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A..."
20:4120:41, 9 October 2012 diff hist +2‎ NgsCcts ‎ →‎Short Read Aligners
20:4020:40, 9 October 2012 diff hist +221‎ NgsCcts ‎ →‎Short Read Aligners
20:3520:35, 9 October 2012 diff hist +6‎ NgsCcts ‎ →‎Short Read Aligners
20:3420:34, 9 October 2012 diff hist +20‎ NgsCcts ‎ →‎Alignment Visualization
20:3320:33, 9 October 2012 diff hist +554‎ NgsCcts ‎No edit summary

21:0621:06, 4 October 2012 diff hist +120‎ PublicDatasetsNgs ‎ →‎Notes on what CCTS BMI wants to populate
17:3217:32, 4 October 2012 diff hist +210‎ PublicDatasetsNgs ‎ →‎Public Genomes and indexes for NGS
17:2917:29, 4 October 2012 diff hist +60‎ NgsCcts ‎ →‎Shared CCTS NGS apps

15:3515:35, 3 October 2012 diff hist +179‎ PublicDatasetsNgs ‎ →‎Notes on what CCTS BMI wants to populate

18:5818:58, 2 October 2012 diff hist +412‎ PublicDatasetsNgs ‎ →‎Notes on what CCTS BMI wants to populate
18:4918:49, 2 October 2012 diff hist +283‎ PublicDatasetsNgs ‎ →‎Notes on what CCTS BMI wants to populate
18:2118:21, 2 October 2012 diff hist +32‎ PublicDatasetsNgs ‎ →‎Directory Structure
18:2018:20, 2 October 2012 diff hist +31‎ N NgsGenomes ‎ Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets current
18:2018:20, 2 October 2012 diff hist 0‎ m PublicDatasetsNgs ‎ Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets

18:1318:13, 1 October 2012 diff hist +2,402‎ N PublicDatasetsNgs ‎ Created page with "= Public Genomes and indexes for NGS = CCTS BMI in conjunection with anyone who wishes to participate, maintains a public directory of genomic sequences and indexes built fro..."

04:2904:29, 12 September 2012 diff hist +52‎ IgvFromComputeNode ‎ →‎Remote display from compute node
04:2304:23, 12 September 2012 diff hist +176‎ IgvFromComputeNode ‎ →‎Remote display from compute node
04:1004:10, 12 September 2012 diff hist +654‎ N IgvFromComputeNode ‎ Created page with "= Remote display from compute node = Example program: IGV # Install & Launch X-Win on your desktop machine * Windows: X-Win32 from [http://www.uab.edu/it/software UAB IT]] ..."
03:3903:39, 12 September 2012 diff hist +343‎ NgsCcts ‎ →‎Shared CCTS NGS apps

15:5215:52, 7 September 2012 diff hist +113‎ N NgsCcts ‎ Created page with "= Shared CCTS NGS apps = This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts"

21:0821:08, 29 February 2012 diff hist +212‎ Cheaha ‎ Add physical node grid to Hardware section

15:3815:38, 13 February 2012 diff hist +7‎ m SubversionOverHttps ‎ →‎Download user certificate

18:2518:25, 26 January 2012 diff hist +59‎ Galaxy ‎ →‎FASTA File
18:2318:23, 26 January 2012 diff hist +87‎ Galaxy ‎ →‎Introduction

22:2722:27, 19 December 2011 diff hist +538‎ GalaxyFilterCommonSnps ‎No edit summary current
22:0422:04, 19 December 2011 diff hist +2,269‎ N GalaxyFilterCommonSnps ‎ Created page with "Protocol for Filtering common SNPs from a set of alignments Galaxy supports set operations on single columns. Thus, I build an index column for each sample formated as "chr:pos:..."