User contributions
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- 15:58, 9 October 2012 (diff | hist) . . (+58) . . NgsCctsBuildAbyss
- 15:57, 9 October 2012 (diff | hist) . . (+96) . . NgsCctsBuildAbyss
- 15:52, 9 October 2012 (diff | hist) . . (+928) . . N NgsCctsBuildAbyss (Created page with " Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] Requires [sparsehash] TARGET_VER=sparsehash-2.0.2...")
- 15:18, 9 October 2012 (diff | hist) . . (+229) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:16, 9 October 2012 (diff | hist) . . (-5) . . NgsCcts (→Short Read Aligners)
- 15:15, 9 October 2012 (diff | hist) . . (-3) . . NgsCcts (→Short Read Aligners)
- 15:15, 9 October 2012 (diff | hist) . . (-6) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:15, 9 October 2012 (diff | hist) . . (+111) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:03, 9 October 2012 (diff | hist) . . (+277) . . N NgsCctsBuildVelvet (Created page with " TARGET_VER=velvet_1.2.08 wget http://www.ebi.ac.uk/~zerbino/velvet/${TARGET_VER}.tgz tar xzvf ${TARGET_VER}.tgz rm ${TARGET_VER}.tgz cd ${TARGET_VER} Edit Makefile to c...")
- 14:52, 9 October 2012 (diff | hist) . . (+29) . . N NgsCctsBuildBwa build (Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa) (top)
- 14:52, 9 October 2012 (diff | hist) . . (0) . . m NgsCctsBuildBwa (Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa)
- 14:47, 9 October 2012 (diff | hist) . . (+393) . . N NgsCctsBuildBwa (Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A...")
- 14:41, 9 October 2012 (diff | hist) . . (+2) . . NgsCcts (→Short Read Aligners)
- 14:40, 9 October 2012 (diff | hist) . . (+221) . . NgsCcts (→Short Read Aligners)
- 14:35, 9 October 2012 (diff | hist) . . (+6) . . NgsCcts (→Short Read Aligners)
- 14:34, 9 October 2012 (diff | hist) . . (+20) . . NgsCcts (→Alignment Visualization)
- 14:33, 9 October 2012 (diff | hist) . . (+554) . . NgsCcts
- 15:06, 4 October 2012 (diff | hist) . . (+120) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 11:32, 4 October 2012 (diff | hist) . . (+210) . . PublicDatasetsNgs (→Public Genomes and indexes for NGS)
- 11:29, 4 October 2012 (diff | hist) . . (+60) . . NgsCcts (→Shared CCTS NGS apps)
- 09:35, 3 October 2012 (diff | hist) . . (+179) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:58, 2 October 2012 (diff | hist) . . (+412) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:49, 2 October 2012 (diff | hist) . . (+283) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:21, 2 October 2012 (diff | hist) . . (+32) . . PublicDatasetsNgs (→Directory Structure)
- 12:20, 2 October 2012 (diff | hist) . . (+31) . . N NgsGenomes (Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets) (top)
- 12:20, 2 October 2012 (diff | hist) . . (0) . . m PublicDatasetsNgs (Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets)
- 12:13, 1 October 2012 (diff | hist) . . (+2,402) . . N PublicDatasetsNgs (Created page with "= Public Genomes and indexes for NGS = CCTS BMI in conjunection with anyone who wishes to participate, maintains a public directory of genomic sequences and indexes built fro...")
- 22:29, 11 September 2012 (diff | hist) . . (+52) . . IgvFromComputeNode (→Remote display from compute node)
- 22:23, 11 September 2012 (diff | hist) . . (+176) . . IgvFromComputeNode (→Remote display from compute node)
- 22:10, 11 September 2012 (diff | hist) . . (+654) . . N IgvFromComputeNode (Created page with "= Remote display from compute node = Example program: IGV # Install & Launch X-Win on your desktop machine * Windows: X-Win32 from [http://www.uab.edu/it/software UAB IT]] ...")
- 21:39, 11 September 2012 (diff | hist) . . (+343) . . NgsCcts (→Shared CCTS NGS apps)
- 09:52, 7 September 2012 (diff | hist) . . (+113) . . N NgsCcts (Created page with "= Shared CCTS NGS apps = This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts")
- 15:08, 29 February 2012 (diff | hist) . . (+212) . . Cheaha (Add physical node grid to Hardware section)
- 09:38, 13 February 2012 (diff | hist) . . (+7) . . m SubversionOverHttps (→Download user certificate)
- 12:25, 26 January 2012 (diff | hist) . . (+59) . . Galaxy (→FASTA File)
- 12:23, 26 January 2012 (diff | hist) . . (+87) . . Galaxy (→Introduction)
- 16:27, 19 December 2011 (diff | hist) . . (+538) . . GalaxyFilterCommonSnps (top)
- 16:04, 19 December 2011 (diff | hist) . . (+2,269) . . N GalaxyFilterCommonSnps (Created page with "Protocol for Filtering common SNPs from a set of alignments Galaxy supports set operations on single columns. Thus, I build an index column for each sample formated as "chr:pos:...")
- 15:56, 13 December 2011 (diff | hist) . . (+43) . . Galaxy (→Configuration File Update)
- 14:56, 13 December 2011 (diff | hist) . . (+79) . . Galaxy (→Index Creation)
- 16:11, 30 November 2011 (diff | hist) . . (-959) . . Galaxy (→Configuration File Update)
- 16:07, 30 November 2011 (diff | hist) . . (+5) . . Galaxy (→Index Creation)
- 16:07, 30 November 2011 (diff | hist) . . (-1,733) . . Galaxy (→Index Creation)
- 14:56, 4 November 2011 (diff | hist) . . (+105) . . GalaxyAddTool (→pre-requisits) (top)
- 14:26, 4 November 2011 (diff | hist) . . (+45) . . GalaxyAddTool (→Creating a command-wrapper by hand)
- 14:14, 4 November 2011 (diff | hist) . . (+34) . . GalaxyAddTool (→Creating a command-wrapper by hand)
- 14:12, 4 November 2011 (diff | hist) . . (+76) . . GalaxyAddTool (→Creating a command-wrapper by hand)
- 14:11, 4 November 2011 (diff | hist) . . (+466) . . GalaxyAddTool (→Creating a command-wrapper by hand)
- 13:51, 4 November 2011 (diff | hist) . . (+221) . . GalaxyAddTool (→Creating a command-wrapper by hand)
- 14:54, 2 November 2011 (diff | hist) . . (+77) . . GalaxyAddTool
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