User contributions
(Latest | Earliest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
- 01:39, 28 March 2013 (diff | hist) . . (+7) . . NgsCctsBuildVicuna (→Vicuna)
- 01:39, 28 March 2013 (diff | hist) . . (+65) . . m NgsCctsBuildVicuna (→Note: pre-built exe for Linux 64bit!)
- 01:38, 28 March 2013 (diff | hist) . . (-24) . . m NgsCctsBuildVicuna (→Vicuna)
- 01:38, 28 March 2013 (diff | hist) . . (-62) . . NgsCctsBuildVicuna (→NCBI toolkit 7.0.0)
- 21:54, 27 March 2013 (diff | hist) . . (+25) . . m NgsCcts (→in process)
- 09:52, 26 March 2013 (diff | hist) . . (+121) . . NgsCcts (→Gene Prediction)
- 09:50, 26 March 2013 (diff | hist) . . (+588) . . N NgsCctsGeneWise (add GeneWise2.2.0 for VICUNA support) (top)
- 09:42, 26 March 2013 (diff | hist) . . (+147) . . NgsCcts (→in process)
- 09:28, 26 March 2013 (diff | hist) . . (+187) . . NgsCctsBuildMosaik (→Build MOSAIK from Source) (top)
- 09:24, 26 March 2013 (diff | hist) . . (+41) . . NgsCcts (→Short Read Aligners)
- 09:14, 26 March 2013 (diff | hist) . . (+24) . . NgsCctsBuildMosaik (→Build MOSAIK from Source)
- 09:14, 26 March 2013 (diff | hist) . . (+362) . . N NgsCctsBuildMosaik (Created page with "= Build MOSAIK from Source = {{ cd /share/apps/ngs-ccts wget https://mosaik-aligner.googlecode.com/files/MOSAIK-2.1.73-source.tar echo "3bb0e83e64b8a102a038a263916022f231e1bb...")
- 09:07, 26 March 2013 (diff | hist) . . (+9) . . m NgsCcts (→Short Read Aligners)
- 09:07, 26 March 2013 (diff | hist) . . (+164) . . NgsCcts (→Short Read Aligners)
- 11:42, 15 March 2013 (diff | hist) . . (+157) . . NgsCcts (→SNP analysis)
- 11:37, 15 March 2013 (diff | hist) . . (+4) . . m NgsCcts (→SNP analysis)
- 11:33, 15 March 2013 (diff | hist) . . (+447) . . NgsCcts (→Short Read (denovo) Assemblers)
- 12:43, 14 March 2013 (diff | hist) . . (+356) . . GBS722 2013 (→Denovo Protocol (2x)) (top)
- 12:41, 14 March 2013 (diff | hist) . . (+113) . . GBS722 2013 (→Ref-based Protocol)
- 12:38, 14 March 2013 (diff | hist) . . (+79) . . GBS722 2013 (→Ref-based Protocol)
- 12:27, 14 March 2013 (diff | hist) . . (+79) . . GBS722 2013 (→Denovo Protocol (2x))
- 12:23, 14 March 2013 (diff | hist) . . (+20) . . GBS722 2013 (→Denovo Protocol (2x))
- 12:21, 14 March 2013 (diff | hist) . . (+6) . . GBS722 2013 (→Denovo Protocol (2x))
- 12:15, 14 March 2013 (diff | hist) . . (+131) . . GBS722 2013 (→Ref-based Protocol)
- 12:14, 14 March 2013 (diff | hist) . . (+73) . . GBS722 2013 (→Ref-based Protocol)
- 11:56, 14 March 2013 (diff | hist) . . (-4) . . GBS722 2013 (→Ref-based Protocol)
- 11:55, 14 March 2013 (diff | hist) . . (+51) . . GBS722 2013 (→Ref-based Protocol)
- 11:54, 14 March 2013 (diff | hist) . . (+11) . . GBS722 2013 (→Ref-based Protocol)
- 11:53, 14 March 2013 (diff | hist) . . (+19) . . GBS722 2013 (→Ref-based Protocol)
- 11:52, 14 March 2013 (diff | hist) . . (+31) . . GBS722 2013 (→Ref-based Protocol)
- 11:42, 14 March 2013 (diff | hist) . . (0) . . GBS722 2013 (→IGV Setup)
- 11:38, 14 March 2013 (diff | hist) . . (+2,392) . . N GBS722 2013 (Created page with "= VACV-WR WT vs DRUG protocol in Galaxy = This is an abbreviated protocol cheat-sheet to help students through the class exercises. ==Links== UAB Galaxy - https://galaxy.ua...")
- 13:04, 11 March 2013 (diff | hist) . . (-49) . . Galaxy File Uploads (remove chmod warning for importfs)
- 12:56, 11 March 2013 (diff | hist) . . (+82) . . Galaxy File Uploads (add warning about permissions.)
- 12:12, 11 March 2013 (diff | hist) . . (+49) . . Galaxy (→Galaxy@UAB)
- 12:11, 11 March 2013 (diff | hist) . . (+212) . . Galaxy (→Installed Genome Indexes: added additional genomes hg16 hg17 mm8 mm7 mm6 mm5, mostly for liftOver support.)
- 12:05, 11 March 2013 (diff | hist) . . (+2) . . m Galaxy (→Overview)
- 12:04, 11 March 2013 (diff | hist) . . (+78) . . Galaxy Importfs (→Copying data to Cheaha using scp: winSCP link)
- 12:01, 11 March 2013 (diff | hist) . . (+255) . . Galaxy File Uploads (added section headers, link to WinSCP, fixed wikipedia link for SCP)
- 11:53, 11 March 2013 (diff | hist) . . (+170) . . Galaxy File Uploads (turn number list to table to add list of drawbacks/limits)
- 15:10, 7 March 2013 (diff | hist) . . (+20) . . Galaxy (→Available Tools)
- 15:08, 7 March 2013 (diff | hist) . . (+374) . . Galaxy (→Organisms)
- 15:08, 7 March 2013 (diff | hist) . . (+570) . . Galaxy (→microbes)
- 14:59, 7 March 2013 (diff | hist) . . (+4,961) . . Galaxy (add available-genomes list from galaxy data-cache)
- 14:30, 7 March 2013 (diff | hist) . . (-4,236) . . Galaxy (→Galaxy@UAB: add list of available genomes, update and abbreviate software list)
- 13:37, 7 March 2013 (diff | hist) . . (-2,092) . . UploadLargeData (removed page. Left links to other related pages. It was redundent.) (top)
- 13:28, 7 March 2013 (diff | hist) . . (+152) . . Galaxy (→Overview)
- 16:50, 9 January 2013 (diff | hist) . . (0) . . IgvFromComputeNode (→Install/Start X on Desktop)
- 16:50, 9 January 2013 (diff | hist) . . (+4) . . IgvFromComputeNode (→Install/Start X on Desktop)
- 06:02, 9 January 2013 (diff | hist) . . (+103) . . NgsCctsBuildVicuna (→Vicuna)
- 02:21, 9 January 2013 (diff | hist) . . (+57) . . NgsCctsBuildVicuna (→NCBI toolkit 7.0.0)
- 02:17, 9 January 2013 (diff | hist) . . (+49) . . NgsCctsBuildVicuna (→NCBI toolkit 7.0.0)
- 02:17, 9 January 2013 (diff | hist) . . (+312) . . NgsCctsBuildVicuna (→Vicuna)
- 01:42, 9 January 2013 (diff | hist) . . (+15) . . NgsCctsBuildVicuna (→NCBI toolkit 7.0.0)
- 23:53, 8 January 2013 (diff | hist) . . (-6) . . NgsCctsBuildVicuna (→NCBI toolkit 7.0.0)
- 23:53, 8 January 2013 (diff | hist) . . (+985) . . N NgsCctsBuildVicuna (Created page with "= Build/Install Broad's Vicuna = == pre-requisites == === NCBI toolkit 7.0.0 === # download cd /share/apps/ngs-ccts/downloads wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi...")
- 14:19, 18 December 2012 (diff | hist) . . (+657) . . PublicDatasetsNgs (top)
- 15:48, 20 November 2012 (diff | hist) . . (+530) . . N PublicDatasetsNgsDbNcbiTaxonomy (Created page with "download and build files with a modified galaxy script. # populates /lustre/project/public_datasets/ngs/databases/ncbi_taxonomy /home/curtish/galaxy/scripts/taxonomy/uab_...") (top)
- 15:17, 12 November 2012 (diff | hist) . . (-1) . . PublicDatasetsNgs (→Directory Structure)
- 10:39, 5 November 2012 (diff | hist) . . (+317) . . NgsCcts (→Short Read Aligners)
- 10:48, 31 October 2012 (diff | hist) . . (+195) . . NgsCcts (→in process)
- 15:53, 30 October 2012 (diff | hist) . . (+34) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:49, 30 October 2012 (diff | hist) . . (+244) . . NgsCcts (→Short Read (denovo) Assemblers)
- 12:22, 25 October 2012 (diff | hist) . . (-1) . . PublicDatasetsNgs (→Directory Structure)
- 12:21, 25 October 2012 (diff | hist) . . (-1) . . PublicDatasetsNgs (→Public Genomes and indexes for NGS)
- 12:20, 25 October 2012 (diff | hist) . . (-1) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:19, 25 October 2012 (diff | hist) . . (+544) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 16:09, 9 October 2012 (diff | hist) . . (-23) . . NgsCctsBuildBwa (→Building BWA for /share/apps/ngs-ccts) (top)
- 16:08, 9 October 2012 (diff | hist) . . (+2) . . NgsCcts (→Short Read Aligners)
- 16:07, 9 October 2012 (diff | hist) . . (+69) . . NgsCcts (→Short Read (denovo) Assemblers)
- 16:05, 9 October 2012 (diff | hist) . . (+6) . . NgsCctsBuildAbyss
- 16:04, 9 October 2012 (diff | hist) . . (+119) . . NgsCctsBuildAbyss
- 16:03, 9 October 2012 (diff | hist) . . (+13) . . NgsCctsBuildAbyss
- 15:58, 9 October 2012 (diff | hist) . . (+58) . . NgsCctsBuildAbyss
- 15:57, 9 October 2012 (diff | hist) . . (+96) . . NgsCctsBuildAbyss
- 15:52, 9 October 2012 (diff | hist) . . (+928) . . N NgsCctsBuildAbyss (Created page with " Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] Requires [sparsehash] TARGET_VER=sparsehash-2.0.2...")
- 15:18, 9 October 2012 (diff | hist) . . (+229) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:16, 9 October 2012 (diff | hist) . . (-5) . . NgsCcts (→Short Read Aligners)
- 15:15, 9 October 2012 (diff | hist) . . (-3) . . NgsCcts (→Short Read Aligners)
- 15:15, 9 October 2012 (diff | hist) . . (-6) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:15, 9 October 2012 (diff | hist) . . (+111) . . NgsCcts (→Short Read (denovo) Assemblers)
- 15:03, 9 October 2012 (diff | hist) . . (+277) . . N NgsCctsBuildVelvet (Created page with " TARGET_VER=velvet_1.2.08 wget http://www.ebi.ac.uk/~zerbino/velvet/${TARGET_VER}.tgz tar xzvf ${TARGET_VER}.tgz rm ${TARGET_VER}.tgz cd ${TARGET_VER} Edit Makefile to c...")
- 14:52, 9 October 2012 (diff | hist) . . (+29) . . N NgsCctsBuildBwa build (Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa) (top)
- 14:52, 9 October 2012 (diff | hist) . . (0) . . m NgsCctsBuildBwa (Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa)
- 14:47, 9 October 2012 (diff | hist) . . (+393) . . N NgsCctsBuildBwa (Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A...")
- 14:41, 9 October 2012 (diff | hist) . . (+2) . . NgsCcts (→Short Read Aligners)
- 14:40, 9 October 2012 (diff | hist) . . (+221) . . NgsCcts (→Short Read Aligners)
- 14:35, 9 October 2012 (diff | hist) . . (+6) . . NgsCcts (→Short Read Aligners)
- 14:34, 9 October 2012 (diff | hist) . . (+20) . . NgsCcts (→Alignment Visualization)
- 14:33, 9 October 2012 (diff | hist) . . (+554) . . NgsCcts
- 15:06, 4 October 2012 (diff | hist) . . (+120) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 11:32, 4 October 2012 (diff | hist) . . (+210) . . PublicDatasetsNgs (→Public Genomes and indexes for NGS)
- 11:29, 4 October 2012 (diff | hist) . . (+60) . . NgsCcts (→Shared CCTS NGS apps)
- 09:35, 3 October 2012 (diff | hist) . . (+179) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:58, 2 October 2012 (diff | hist) . . (+412) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:49, 2 October 2012 (diff | hist) . . (+283) . . PublicDatasetsNgs (→Notes on what CCTS BMI wants to populate)
- 12:21, 2 October 2012 (diff | hist) . . (+32) . . PublicDatasetsNgs (→Directory Structure)
- 12:20, 2 October 2012 (diff | hist) . . (+31) . . N NgsGenomes (Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets) (top)
- 12:20, 2 October 2012 (diff | hist) . . (0) . . m PublicDatasetsNgs (Curtish@uab.edu moved page NgsGenomes to PublicDatasetsNgs: creating a sub-page of PublicDatasets)
- 12:13, 1 October 2012 (diff | hist) . . (+2,402) . . N PublicDatasetsNgs (Created page with "= Public Genomes and indexes for NGS = CCTS BMI in conjunection with anyone who wishes to participate, maintains a public directory of genomic sequences and indexes built fro...")
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