NgsCctsBuildBwa

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m (Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa)
(Building BWA for /share/apps/ngs-ccts)
 
Line 5: Line 5:
 
  BWA_VER=bwa-0.6.2
 
  BWA_VER=bwa-0.6.2
 
  wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
 
  wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
  bunzip2 ${BWA_VER}.tar.bz2
+
  tar jxvf ${BWA_VER}.tar.bz2
tar xvf ${BWA_VER}.tar
+
 
  rm ${BWA_VER}.tar*
 
  rm ${BWA_VER}.tar*
 
  cd ${BWA_VER}
 
  cd ${BWA_VER}

Latest revision as of 17:09, 9 October 2012

[edit] Building BWA for /share/apps/ngs-ccts

Downloading and building BWA

BWA_VER=bwa-0.6.2
wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
tar jxvf ${BWA_VER}.tar.bz2
rm ${BWA_VER}.tar*
cd ${BWA_VER}
make
cd ..
ln -s `pwd`/${BWA_VER} latest/bwa
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