User contributions for Ozborn@uab.edu
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15 September 2011
- 19:5119:51, 15 September 2011 diff hist +237 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 19:4619:46, 15 September 2011 diff hist +152 Galaxy DNA-Seq Tutorial →Results
- 19:4319:43, 15 September 2011 diff hist +262 Galaxy DNA-Seq Tutorial →Performing cleanup
- 19:4019:40, 15 September 2011 diff hist +32 N File:FastQTrimmerRun.jpg CMV 21950R being trimmed from 3' current
- 19:3119:31, 15 September 2011 diff hist +226 Galaxy DNA-Seq Tutorial No edit summary
- 19:2719:27, 15 September 2011 diff hist +88 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:2519:25, 15 September 2011 diff hist 0 File:DrawQualityScoreBoxplot.jpg uploaded a new version of "File:DrawQualityScoreBoxplot.jpg": Run box plot current
- 19:2219:22, 15 September 2011 diff hist +35 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:2119:21, 15 September 2011 diff hist 0 N File:QualityStatsResults.jpg No edit summary current
- 19:1819:18, 15 September 2011 diff hist −10 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:1719:17, 15 September 2011 diff hist 0 N File:RunComputeQualityStats.jpg No edit summary current
- 19:1419:14, 15 September 2011 diff hist +30 Galaxy DNA-Seq Tutorial No edit summary
- 19:1119:11, 15 September 2011 diff hist +98 Galaxy DNA-Seq Tutorial →Reference Genome
- 19:0919:09, 15 September 2011 diff hist +114 Galaxy DNA-Seq Tutorial No edit summary
- 19:0419:04, 15 September 2011 diff hist +465 Galaxy DNA-Seq Tutorial FastQC and Compute stats cleanup
- 18:4718:47, 15 September 2011 diff hist 0 N File:FastQCRunSettings.jpg No edit summary current
- 18:3918:39, 15 September 2011 diff hist +127 Galaxy DNA-Seq Tutorial No edit summary
- 18:3218:32, 15 September 2011 diff hist +115 Galaxy DNA-Seq Tutorial →Reference Genome
- 18:3018:30, 15 September 2011 diff hist +217 Galaxy →Available datasets: Added new datasets
- 18:2118:21, 15 September 2011 diff hist +368 Galaxy DNA-Seq Tutorial No edit summary
- 18:0918:09, 15 September 2011 diff hist +66 Galaxy DNA-Seq Tutorial →Linking to data
- 18:0818:08, 15 September 2011 diff hist 0 N File:DataLibraryVacWRFastQ.jpg No edit summary current
- 15:5615:56, 15 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial Pileup filtering
- 15:5515:55, 15 September 2011 diff hist +35 N File:PileupFiltering100Reads.jpg Pileup run settings for Vaccinia WR current
- 05:1305:13, 15 September 2011 diff hist +75 Galaxy DNA-Seq Tutorial Filtering SNPs
- 05:1105:11, 15 September 2011 diff hist +50 N File:FilterRunVacWR.jpg How to filter a SAM file for SNPs versus reference current
- 04:2204:22, 15 September 2011 diff hist +32 Galaxy DNA-Seq Tutorial No edit summary
- 04:2104:21, 15 September 2011 diff hist +27 N File:SNPEffResults.jpg SNP Results for Vaccinia WR current
- 04:2004:20, 15 September 2011 diff hist +141 Galaxy DNA-Seq Tutorial No edit summary
- 04:1804:18, 15 September 2011 diff hist +17 N File:SNPEffCoverage.jpg For a vaccinia WR current
- 04:1704:17, 15 September 2011 diff hist +214 Galaxy DNA-Seq Tutorial SNPEff separate section
- 03:4703:47, 15 September 2011 diff hist +78 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:4503:45, 15 September 2011 diff hist +19 N File:SNPEff.jpg SNPEff run settings current
- 03:3803:38, 15 September 2011 diff hist +127 Galaxy DNA-Seq Tutorial →BAM Conversion
- 03:3403:34, 15 September 2011 diff hist +153 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0903:09, 15 September 2011 diff hist +107 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0803:08, 15 September 2011 diff hist +44 N File:GeneratePileup.jpg Generate pileup for Vaccinia, call consensus current
- 03:0603:06, 15 September 2011 diff hist +20 Galaxy DNA-Seq Tutorial →Looking at differences with SNPEff
14 September 2011
- 22:3622:36, 14 September 2011 diff hist +22 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +29 N File:Sam2bam.jpg Conversion of SAM file to BAM current
- 22:3522:35, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +22 N File:Flagstat.jpg Flag stat on BAM files current
- 21:5321:53, 14 September 2011 diff hist −1 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:5221:52, 14 September 2011 diff hist +26 N File:Bwa run cmv 227r.jpg BWA run of VAC WR CMV 227R current
- 21:3321:33, 14 September 2011 diff hist +31 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:3321:33, 14 September 2011 diff hist +39 N File:Bwa run cmv 21950r.jpg Running BWA on CMV 21950R in UAB Galaxy current
- 21:0821:08, 14 September 2011 diff hist 0 File:Cmv21950r 3 1 original boxplot.jpg uploaded a new version of "File:Cmv21950r 3 1 original boxplot.jpg" current
- 21:0521:05, 14 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 21:0421:04, 14 September 2011 diff hist 0 N File:DrawQualityScoreBoxplot.jpg No edit summary
- 20:5920:59, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial →Performing cleanup
