User contributions for Ppreddy@uab.edu
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8 December 2010
- 20:3020:30, 8 December 2010 diff hist −361 Trac →Create a Trac project: rm repotype and repopath for initenv command current
- 20:2920:29, 8 December 2010 diff hist −245 Trac →Install Trac: delete plugin install steps, as this would further require editing of trac.ini, so keeping it simple for now
7 December 2010
- 15:3715:37, 7 December 2010 diff hist −234 Galaxy delete xampp details
6 December 2010
- 17:3517:35, 6 December 2010 diff hist +482 Trac add links to headers for Mac section
- 17:0517:05, 6 December 2010 diff hist +8 Trac indent numbered lists and preformatted text
- 17:0117:01, 6 December 2010 diff hist −568 Trac →Developers: mv setuptools to Python wiki and indent numbered lists
- 16:2916:29, 6 December 2010 diff hist +654 Python mv setuptools install from trac wiki
4 December 2010
- 00:0500:05, 4 December 2010 diff hist +60 Welcome add doc link to collaboration
3 December 2010
- 21:3821:38, 3 December 2010 diff hist +33 Documentation →Developer Guide: add dev tools section
- 21:3721:37, 3 December 2010 diff hist +92 Documentation →User Guide: add sub headers and order alphabetically
- 21:2221:22, 3 December 2010 diff hist +244 Trac →Install Trac: add easy_install for git, toc, and pygments
- 21:1321:13, 3 December 2010 diff hist +3,132 Trac →Developers: add trac project create steps
- 19:3619:36, 3 December 2010 diff hist +273 Python add references
- 19:3419:34, 3 December 2010 diff hist −5 Python →Customize Python Packages Install Location to $HOME: change header
- 19:3319:33, 3 December 2010 diff hist +2,614 N Python initial doc for python
- 18:0118:01, 3 December 2010 diff hist +1,293 Trac →Developers: add python info for mac
2 December 2010
- 20:0820:08, 2 December 2010 diff hist −38 Trac →Developers: change sentence formation
- 20:0120:01, 2 December 2010 diff hist +20 Galaxy →Developers: add run step
- 19:5819:58, 2 December 2010 diff hist 0 Galaxy →Mac OS X: change bullets type
- 19:5419:54, 2 December 2010 diff hist +3,687 N XAMPP initial doc for xampp current
- 19:3919:39, 2 December 2010 diff hist +3,169 N Galaxy initial doc for galaxy
- 18:5118:51, 2 December 2010 diff hist +14 Documentation →User Guide: add galaxy to list of apps
30 November 2010
- 23:3923:39, 30 November 2010 diff hist +98 Trac →End Users: point to help links to end users
- 22:4422:44, 30 November 2010 diff hist +1,280 N Trac initial doc for Trac
- 21:0021:00, 30 November 2010 diff hist +12 Documentation →User Guide: add trac to the list of apps
10 August 2010
- 20:1020:10, 10 August 2010 diff hist +42 FreeSurfer →Set up FreeSurfer Environment: add fsl wiki link
- 20:0220:02, 10 August 2010 diff hist +507 N FSL initial fsl content
- 19:4319:43, 10 August 2010 diff hist +11 Documentation →User Guide: add fsl
2 August 2010
- 18:3718:37, 2 August 2010 diff hist +418 WorkingWithPutty →Set Environment Variables: add creation of new env var current
- 18:3018:30, 2 August 2010 diff hist +23 N File:Putty-env1.png create new PATH env var current
- 18:2418:24, 2 August 2010 diff hist −17 WorkingWithPutty →PuTTY: change path of putty install dir
- 15:5815:58, 2 August 2010 diff hist +202 FreeSurfer add working with putty url
- 15:5415:54, 2 August 2010 diff hist +272 FreeSurfer →Clean-up scratch: link to file transfer with psftp steps
- 15:3715:37, 2 August 2010 diff hist +11,166 N WorkingWithPutty add putty setup and file transfer with psftp
- 15:0515:05, 2 August 2010 diff hist +21 N File:Psftp2.png open psftp connection current
- 15:0015:00, 2 August 2010 diff hist +18 N File:Psftp1.png start psftp window current
- 14:5514:55, 2 August 2010 diff hist +73 N File:Putty-env.png how to add installed tool paths to user environment variables in Windows. current
30 July 2010
- 22:1022:10, 30 July 2010 diff hist +134 FreeSurfer →Create job submission script: add headers
- 22:0622:06, 30 July 2010 diff hist +308 FreeSurfer →Create job submission script: add refs
- 21:5821:58, 30 July 2010 diff hist +1 FreeSurfer →Create job submission script: change sleep time
- 21:5621:56, 30 July 2010 diff hist +3 FreeSurfer →Create job submission script: delete my email address from job script
- 21:5521:55, 30 July 2010 diff hist +87 FreeSurfer →Create job submission script: add jobs dir
- 21:5421:54, 30 July 2010 diff hist +170 FreeSurfer →Create job submission script
- 21:4821:48, 30 July 2010 diff hist +301 FreeSurfer →Create job submission script: modify recon-all submit script
29 July 2010
- 14:1614:16, 29 July 2010 diff hist +146 FreeSurfer →Run example recon_all process: add example img to download
27 July 2010
- 21:3421:34, 27 July 2010 diff hist +254 N File:Example.nii.zip File is an example brain mri in Nifti (.nii) format to perform recon-all analysis. Ref: http://www.barre.nom.fr/medical/samples/files/CT-MONO2-16-brain.gz http://www.cabiatl.com/mricro/dicom/index.html http://www.cabiatl.com/mricro/mricron/dcm2nii.html current
- 21:0621:06, 27 July 2010 diff hist +165 FreeSurfer →Prep for running example recon_all process: add sections to prep for running recon-all
- 17:3717:37, 27 July 2010 diff hist +242 FreeSurfer format text, add note for fsl
26 July 2010
- 21:5921:59, 26 July 2010 diff hist +431 FreeSurfer add toc, extra headers
- 19:4919:49, 26 July 2010 diff hist +283 FreeSurfer →Steps to run FreeSurfer: steps to source bashrc and execute job script