Cheaha Software: Difference between revisions
Jump to navigation
Jump to search
(updated page April 15th 2013) |
No edit summary |
||
| Line 1: | Line 1: | ||
This page shows a list of installed modules on the [[Cheaha]] research computing system. If you don't find a particular package listed on this page, please send a request to [mailto:support@vo.uabgrid.uab.edu cheaha support] to request the software. | This page shows a list of installed modules on the [[Cheaha]] research computing system. If you don't find a particular package listed on this page, please send a request to [mailto:support@vo.uabgrid.uab.edu cheaha support] to request the software. | ||
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. This list is current as of | This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. This list is current as of '''April 15th 2013'''. | ||
==Software modules installed on Cheaha== | ==Software modules installed on Cheaha== | ||
Revision as of 14:20, 15 April 2013
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. This list is current as of April 15th 2013.
Software modules installed on Cheaha
| Software | Latest Version | Other Versions | Remarks |
|---|---|---|---|
| AFNI | AFNI_2011_12_21_1014 | linux openmp 64 | |
| Affymetrix | 1.4.3 | ||
| Amber | 10 | ||
| ANNOVAR | 2012Feb23 | ||
| ANSYS | 14.0 | ||
| APBS | 1.0 | ||
| Aspera | 2.4.7 | ||
| Atlas | 3.8 | ||
| AutoDock | 4.2.3 | ||
| Birdsuite | 1.5.5 | 1.5.3 | |
| Bowtie | 0.9 | 0.10,0.12 | |
| CHASE | 1 | ||
| CUDA | 4 | ||
| COMSOL | 4.2 | ||
| Cufflinks | 0.9 | ||
| eigenstrat | 2.0 | ||
| EMAN2 | 2.02 | ?? | |
| ENT | 1.0.2 | ||
| fastPHASE | 1.4 | ||
| FFTW | 3.1.2 | gnu/intel | |
| FreeSurfer | 5.2.0 | ||
| FREGENE | 2008 | ||
| Fsl | 4.1.6 | ||
| Galaxy | 1.0 | ||
| genn | |||
| Gromacs | 4.6.1 | 4,4.5 | gnu/intel |
| GTOOL | 0.6.7 | ||
| HAPGEN | 1.3.0 | ||
| Haskell/GHC | 6.10.4 | ||
| Illuminus | 2 | ||
| IMPUTE2 | 2.1.2 | 2.1.0, 2.0.3 | |
| JAGS | 1.0 | gnu | |
| LAM-MPI | 7.1 | gnu/intel | |
| LS-DYNA | 9.7.1 | ||
| MACH | 1.0.16 | ||
| MACS | 1.3.6 | ||
| Magma | 5.2 | ||
| Maq | 0.7.1 | ||
| MarthLab | mosaik 0.9.891 | gigabayes, pyrobayes | |
| MATLAB | R2012b | R2009(a,b),R2010(a,b),R2011(a,b),R2012a | DCS-128 |
| MPICH | 2 | 1.2 | gnu/intel |
| MrBayes | 3.1.2 | intel | |
| MVAPICH | 2 | gnu | |
| Namd | 2.9 | 2.8,2.7,2.6 | ibverbs |
| OpenMPI | 1.6.4 | gnu/intel | |
| ParaView | 3.12 | 3.4,3.6,3.8 | |
| PDT | 3.17 | 3.14 | |
| PennCNV | 2010May01 | ||
| PHASE | 2.1.1 | ||
| PLINK | 1.07 | 1.06,1.05 | |
| Python | 2.7 | 2.6 | |
| R | 2.15.3 | 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0 | |
| RAxML | 7.2.6 | ||
| RNA pipeline | 0.5.0 | 0.31 | |
| S.A.G.E. | 6.2 | 6.0 | |
| SAMtools | 0.1 | ||
| ScaleMP | 3.2.2 | fftw optimized | |
| SHRiMP | 1.3 | 1.2 | |
| SOLAR | 4.3.1 | ||
| SPPARKS | 30May11 | 07Aug09 | |
| Structure | 2.2 | ||
| TAU | 2.21.1 | lam, open mpi | |
| TopHat | 1.1 | 1.0.8 | |
| varianttools | 1.0.1 | 1.0 | |
| VEGAS | 0.8 | ||
| VMD | 1.9.0 | 1.8.6 |