Cheaha Software: Difference between revisions
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==Software modules installed on Cheaha== | ==Software modules installed on Cheaha== | ||
{| border="1" align="center" cellpadding="10" style="text-align:center;" | {| border="1" align="center" cellpadding="10" style="text-align:center;" | ||
|+ | |+ | ||
! Software | ! Software | ||
! Latest Version | ! Latest Version | ||
| Line 17: | Line 17: | ||
|- | |- | ||
|'''[[Affymetrix]]''' | |'''[[Affymetrix]]''' | ||
|1. | |1.14.3 | ||
| | | | ||
| | | | ||
| Line 29: | Line 29: | ||
|2012Feb23 | |2012Feb23 | ||
| | | | ||
| | |ngs-ccts 2013.09.11/2013.04.03 | ||
|- | |- | ||
|'''[[ANSYS]]''' | |'''[[ANSYS]]''' | ||
| Line 64: | Line 64: | ||
|0.9 | |0.9 | ||
|0.10,0.12 | |0.10,0.12 | ||
| | |ngs-ccts 2.1.0 | ||
|- | |||
|'''[[bwa]]''' | |||
|0.6.2 | |||
|0.5.10,0.5.9 | |||
|ngs-ccts | |||
|- | |||
|'''[[cgatools]]''' | |||
|1.8.0 | |||
|1.7.1,1.5.0 | |||
|ngs-ccts | |||
|- | |- | ||
|'''[[CHASE]]''' | |'''[[CHASE]]''' | ||
| Line 88: | Line 98: | ||
|'''[[Cufflinks]]''' | |'''[[Cufflinks]]''' | ||
|0.9 | |0.9 | ||
| | |||
|ngs-ccts 2.1.1 | |||
|- | |||
|'''[[DSSP]]''' | |||
|2.0.4 | |||
| | |||
| | |||
|- | |||
|'''[[Eclipse]]''' | |||
|4.3.1 | |||
| | | | ||
| | | | ||
| Line 127: | Line 147: | ||
|- | |- | ||
|'''[[Fsl]]''' | |'''[[Fsl]]''' | ||
|5.0.6 | |||
|4.1.6 | |4.1.6 | ||
| | | | ||
|- | |- | ||
| Line 177: | Line 197: | ||
|- | |- | ||
|'''[[IMPUTE2]]''' | |'''[[IMPUTE2]]''' | ||
|2.1.2 | |2.3.0 | ||
|2.1.2,2.1.0, 2.0.3 | |||
| | | | ||
|- | |- | ||
| Line 268: | Line 288: | ||
|'''[[PennCNV]]''' | |'''[[PennCNV]]''' | ||
|2010May01 | |2010May01 | ||
| | |||
| | |||
|- | |||
|'''[[petsc]]''' | |||
|3.4.3 | |||
| | | | ||
| | | | ||
| Line 309: | Line 334: | ||
|0.1 | |0.1 | ||
| | | | ||
| | |ngs-ccts 0.1.19 | ||
|- | |- | ||
|'''[[ScaleMP]]''' | |'''[[ScaleMP]]''' | ||
| Line 335: | Line 360: | ||
| | | | ||
| | | | ||
|- | |||
|'''[[tabix]]''' | |||
|0.2.6 | |||
| | |||
|ngs-ccts | |||
|- | |- | ||
|'''[[TAU]]''' | |'''[[TAU]]''' | ||
| Line 344: | Line 374: | ||
|1.1 | |1.1 | ||
|1.0.8 | |1.0.8 | ||
| | |ngs-ccts 2.0.10 | ||
|- | |- | ||
|'''[[varianttools]]''' | |'''[[varianttools]]''' | ||
| Line 350: | Line 380: | ||
|1.0 | |1.0 | ||
| | | | ||
|- | |||
|'''[[vcftools]]''' | |||
|0.1.11 | |||
| | |||
|ngs-ccts | |||
|- | |- | ||
|'''[[VEGAS]]''' | |'''[[VEGAS]]''' | ||
| Line 355: | Line 390: | ||
| | | | ||
| | | | ||
|- | |||
|'''[[velvet]]''' | |||
|1.2.10 | |||
| | |||
|ngs-ccts | |||
|- | |- | ||
|'''[[VMD]]''' | |'''[[VMD]]''' | ||
Latest revision as of 15:06, 6 October 2017
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.
Software modules installed on Cheaha
| Software | Latest Version | Other Versions | Remarks |
|---|---|---|---|
| AFNI | AFNI_Jun_25_2013 | AFNI_2011_12_21_1014 | linux openmp 64, linux Xorg7 64 |
| Affymetrix | 1.14.3 | ||
| Amber | 10 | ||
| ANNOVAR | 2012Feb23 | ngs-ccts 2013.09.11/2013.04.03 | |
| ANSYS | 14.5 | 14.0 | |
| APBS | 1.0 | ||
| Aspera | 2.4.7 | ||
| Atlas | 3.8 | ||
| AutoDock | 4.2.3 | ||
| Birdsuite | 1.5.5 | 1.5.3 | |
| Bowtie | 0.9 | 0.10,0.12 | ngs-ccts 2.1.0 |
| bwa | 0.6.2 | 0.5.10,0.5.9 | ngs-ccts |
| cgatools | 1.8.0 | 1.7.1,1.5.0 | ngs-ccts |
| CHASE | 1 | ||
| cmake | 2.8.10.2 | ||
| CUDA | 4 | ||
| COMSOL | 4.2 | ||
| Cufflinks | 0.9 | ngs-ccts 2.1.1 | |
| DSSP | 2.0.4 | ||
| Eclipse | 4.3.1 | ||
| eigenstrat | 2.0 | ||
| EMAN2 | 2.02 | ?? | |
| ENT | 1.0.2 | ||
| fastPHASE | 1.4 | ||
| FFTW | 3.1.2 | gnu/intel | |
| FreeSurfer | 5.3.0 | 4.5,5.2.0 | |
| FREGENE | 2008 | ||
| Fsl | 5.0.6 | 4.1.6 | |
| Galaxy | 1.0 | ||
| gcc | 4.8.1 | ||
| genn | |||
| Gromacs | 4.6.1 | 4,4.5 | gnu/intel |
| GTOOL | 0.6.7 | ||
| HAPGEN | 1.3.0 | ||
| Haskell/GHC | 6.10.4 | ||
| HYPERWORKS | 12.0 | ||
| Illuminus | 2 | ||
| IMPUTE2 | 2.3.0 | 2.1.2,2.1.0, 2.0.3 | |
| JAGS | 1.0 | gnu | |
| LAM-MPI | 7.1 | gnu/intel | |
| LS-DYNA | 9.7.1 | ||
| MACH | 1.0.16 | ||
| MACS | 1.3.6 | ||
| Magma | 5.2 | ||
| Maq | 0.7.1 | ||
| MarthLab | mosaik 0.9.891 | gigabayes, pyrobayes | |
| MATLAB | R2013a | R2009(a,b),R2010(a,b),R2011(a,b),R2012a | DCS-128 |
| MPICH | 2 | 1.2 | gnu/intel |
| mplayer | 1.1.1 | ||
| MrBayes | 3.1.2 | intel | |
| MVAPICH | 2 | gnu | |
| Namd | 2.9 | 2.8,2.7,2.6 | ibverbs |
| OpenMPI | 1.6.4 | 1.2 | gnu/intel |
| ParaView | 3.12 | 3.4,3.6,3.8 | |
| PDT | 3.19 | 3.14,3.17 | |
| PennCNV | 2010May01 | ||
| petsc | 3.4.3 | ||
| PHASE | 2.1.1 | ||
| PLINK | 1.07 | 1.06,1.05 | |
| Python | 2.7 | 2.6 | |
| R | 3.0.1 | 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0,2.15.3,3.0.0 | |
| RAxML | 7.2.6 | ||
| RNA pipeline | 0.5.0 | 0.31 | |
| S.A.G.E. | 6.2 | 6.0 | |
| SAMtools | 0.1 | ngs-ccts 0.1.19 | |
| ScaleMP | 3.2.2 | fftw optimized | |
| SHRiMP | 1.3 | 1.2 | |
| SOLAR | 4.3.1 | ||
| SPPARKS | 30May11 | 07Aug09 | |
| Structure | 2.2 | ||
| tabix | 0.2.6 | ngs-ccts | |
| TAU | 2.22.2 | 2.21.1 | lam, open mpi |
| TopHat | 1.1 | 1.0.8 | ngs-ccts 2.0.10 |
| varianttools | 1.0.1 | 1.0 | |
| vcftools | 0.1.11 | ngs-ccts | |
| VEGAS | 0.8 | ||
| velvet | 1.2.10 | ngs-ccts | |
| VMD | 1.9.0 | 1.8.6 |