Cheaha Software: Difference between revisions
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Revision as of 22:12, 17 February 2014
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.
Software modules installed on Cheaha
| Software | Latest Version | Other Versions | Remarks |
|---|---|---|---|
| AFNI | AFNI_Jun_25_2013 | AFNI_2011_12_21_1014 | linux openmp 64, linux Xorg7 64 |
| Affymetrix | 1.14.3 | ||
| Amber | 10 | ||
| ANNOVAR | 2012Feb23 | ngs-ccts 2013.09.11/2013.04.03 | |
| ANSYS | 14.5 | 14.0 | |
| APBS | 1.0 | ||
| Aspera | 2.4.7 | ||
| Atlas | 3.8 | ||
| AutoDock | 4.2.3 | ||
| Birdsuite | 1.5.5 | 1.5.3 | |
| Bowtie | 0.9 | 0.10,0.12 | ngs-ccts 2.1.0 |
| bwa | 0.6.2 | 0.5.10,0.5.9 | ngs-ccts |
| cgatools | 1.8.0 | 1.7.1,1.5.0 | ngs-ccts |
| CHASE | 1 | ||
| cmake | 2.8.10.2 | ||
| CUDA | 4 | ||
| COMSOL | 4.2 | ||
| Cufflinks | 0.9 | ngs-ccts 2.1.1 | |
| DSSP | 2.0.4 | ||
| Eclipse | 4.3.1 | ||
| eigenstrat | 2.0 | ||
| EMAN2 | 2.02 | ?? | |
| ENT | 1.0.2 | ||
| fastPHASE | 1.4 | ||
| FFTW | 3.1.2 | gnu/intel | |
| FreeSurfer | 5.3.0 | 4.5,5.2.0 | |
| FREGENE | 2008 | ||
| Fsl | 5.0.6 | 4.1.6 | |
| Galaxy | 1.0 | ||
| gcc | 4.8.1 | ||
| genn | |||
| Gromacs | 4.6.1 | 4,4.5 | gnu/intel |
| GTOOL | 0.6.7 | ||
| HAPGEN | 1.3.0 | ||
| Haskell/GHC | 6.10.4 | ||
| HYPERWORKS | 12.0 | ||
| Illuminus | 2 | ||
| IMPUTE2 | 2.3.0 | 2.1.2,2.1.0, 2.0.3 | |
| JAGS | 1.0 | gnu | |
| LAM-MPI | 7.1 | gnu/intel | |
| LS-DYNA | 9.7.1 | ||
| MACH | 1.0.16 | ||
| MACS | 1.3.6 | ||
| Magma | 5.2 | ||
| Maq | 0.7.1 | ||
| MarthLab | mosaik 0.9.891 | gigabayes, pyrobayes | |
| MATLAB | R2013a | R2009(a,b),R2010(a,b),R2011(a,b),R2012a | DCS-128 |
| MPICH | 2 | 1.2 | gnu/intel |
| mplayer | 1.1.1 | ||
| MrBayes | 3.1.2 | intel | |
| MVAPICH | 2 | gnu | |
| Namd | 2.9 | 2.8,2.7,2.6 | ibverbs |
| OpenMPI | 1.6.4 | 1.2 | gnu/intel |
| ParaView | 3.12 | 3.4,3.6,3.8 | |
| PDT | 3.19 | 3.14,3.17 | |
| PennCNV | 2010May01 | ||
| petsc | 3.4.3 | ||
| PHASE | 2.1.1 | ||
| PLINK | 1.07 | 1.06,1.05 | |
| Python | 2.7 | 2.6 | |
| R | 3.0.1 | 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0,2.15.3,3.0.0 | |
| RAxML | 7.2.6 | ||
| RNA pipeline | 0.5.0 | 0.31 | |
| S.A.G.E. | 6.2 | 6.0 | |
| SAMtools | 0.1 | ngs-ccts 0.1.19 | |
| ScaleMP | 3.2.2 | fftw optimized | |
| SHRiMP | 1.3 | 1.2 | |
| SOLAR | 4.3.1 | ||
| SPPARKS | 30May11 | 07Aug09 | |
| Structure | 2.2 | ||
| TAU | 2.22.2 | 2.21.1 | lam, open mpi |
| TopHat | 1.1 | 1.0.8 | ngs-ccts 2.0.10 |
| varianttools | 1.0.1 | 1.0 | |
| vcftools | 0.1.11 | ngs-ccts | |
| VEGAS | 0.8 | ||
| velvet | 1.2.10 | ngs-ccts | |
| VMD | 1.9.0 | 1.8.6 |