NgsCctsBuildBwa: Difference between revisions

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(Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A...")
 
 
(One intermediate revision by the same user not shown)
Line 5: Line 5:
  BWA_VER=bwa-0.6.2
  BWA_VER=bwa-0.6.2
  wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
  wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
  bunzip2 ${BWA_VER}.tar.bz2
  tar jxvf ${BWA_VER}.tar.bz2
tar xvf ${BWA_VER}.tar
  rm ${BWA_VER}.tar*
  rm ${BWA_VER}.tar*
  cd ${BWA_VER}
  cd ${BWA_VER}

Latest revision as of 22:09, 9 October 2012

Building BWA for /share/apps/ngs-ccts

Downloading and building BWA 

BWA_VER=bwa-0.6.2
wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb
tar jxvf ${BWA_VER}.tar.bz2
rm ${BWA_VER}.tar*
cd ${BWA_VER}
make
cd ..
ln -s `pwd`/${BWA_VER} latest/bwa
Retrieved from "https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&oldid=4290"