MarthLab: Difference between revisions
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MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format. | MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format. | ||
Project website: http://bioinformatics.bc.edu/marthlab/ | '''Project website:''' http://bioinformatics.bc.edu/marthlab/ | ||
====Load SGE module==== | |||
The following Modules files should be loaded for this package: | The following Modules files should be loaded for this package: | ||
<pre> | <pre> | ||
module load marthlab/mosaik | module load marthlab/mosaik | ||
</pre> | </pre> | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | |||
Latest revision as of 15:17, 4 April 2012
This page is a Generic stub.
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MOSAIK is a reference-guided assembler comprising of four main modular programs:
- MosaikBuild
- MosaikAligner
- MosaikSort
- MosaikAssembler.
MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.
Project website: http://bioinformatics.bc.edu/marthlab/
Load SGE module
The following Modules files should be loaded for this package:
module load marthlab/mosaik