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MOSAIK is a reference-guided assembler comprising of four main modular programs:
MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.
Project website: http://bioinformatics.bc.edu/marthlab/
Load SGE module
The following Modules files should be loaded for this package:
module load marthlab/mosaik