2011 HPC Boot Camp: Difference between revisions
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The UAB HPC Bootcamp is being held in conjunction with the [[UAB Research Computing Day 2011]]. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm. | The UAB HPC Bootcamp is being held in conjunction with the [[UAB Research Computing Day 2011]]. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm. | ||
The 2011 UAB HPC Boot Camp is sponsored by the Office of the Vice President for Information Technology (UAB IT), the Section on Statistical Genetics in the School of Public Health (SSG), the Center for Clinical and Translational Science (CCTS). | |||
== Registration == | == Registration == | ||
Registration is requested by Wednesday September 14th to attend this event. | Registration is requested by Wednesday September 14th to attend this event. [http://uabhpcbootcamp2011.eventbrite.com/ Please register here] | ||
== Agenda == | == Agenda == | ||
8:30-9:00 Registration and Refreshments | |||
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing | 9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing | ||
9:05 - 11:00 Galaxy Introduction - John | 9:05 - 11:00 [[UAB_Galaxy_Workshop_Tutorial|Galaxy Introduction - Next Generation Sequencing Analysis]] | ||
* 9:05 - 9:20 Logging in and uploading data to Galaxy | |||
* 9:20 - 9:50 [[Galaxy_DNA-Seq_Tutorial|NGS genome sequencing analysis]], John Osborne, [http://www.ccts.uab.edu/pages/bmi/bmi_explore.htm CCTS] | |||
* 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, [http://www.ccts.uab.edu/pages/bmi/bmi_explore.htm CCTS] | |||
* 10:30 - 11:00 Galaxy Workflows & Advanced Topics | |||
11:00-1:00 Lunch on your own | 11:00-1:00 Lunch on your own | ||
| Line 15: | Line 24: | ||
1:00-2:00 - Research Computing Resources Session | 1:00-2:00 - Research Computing Resources Session | ||
* 1:00 - 1:20 Overview of Research Computing | * 1:00 - 1:20 Overview of Research Computing Resources -- John-Paul Robinson, UAB IT Research Computing | ||
* 1:20 - 1:40 | * 1:20 - 1:40 [http://docs.uabgrid.uab.edu/w/images/a/ae/HPCBootCamp2011-UsingGitForDevelopment.pdf Using Git for Development] -- Shantanu Pavgi, UAB IT Research Computing | ||
* 1:40 - 2:00 | * 1:40 - 2:00 Hadoop on Cheaha -- John-Paul Robinson, UAB IT Research Computing | ||
2:00-2:10 - break | 2:00-2:10 - break | ||
| Line 23: | Line 32: | ||
2:10-3:20 - Developing Research Computing Solutions Session | 2:10-3:20 - Developing Research Computing Solutions Session | ||
* 2:10 - 2: | * 2:10 - 2:40 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE | ||
* 2: | * 2:40 - 3:00 - [http://docs.uabgrid.uab.edu/w/images/4/4c/RestfulWebServices_091611.pdf RESTful Web Service Interfaces] -- Don Dempsey, CCTS | ||
* 3:00 - 3:30 - [[MATLAB_workshop_2011 |MatLab for Managing Workflows]] [http://docs.uabgrid.uab.edu/wiki/File:Matlab_workflows_bootcamp.pdf PDF] -- Thomas Anthony, UAB IT Research Computing - SoE | |||
* 3: | |||
[[Category:RCDay2011]] | [[Category:RCDay2011]] | ||
Latest revision as of 19:13, 6 October 2011
The UAB HPC Bootcamp is being held in conjunction with the UAB Research Computing Day 2011. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm.
The 2011 UAB HPC Boot Camp is sponsored by the Office of the Vice President for Information Technology (UAB IT), the Section on Statistical Genetics in the School of Public Health (SSG), the Center for Clinical and Translational Science (CCTS).
Registration
Registration is requested by Wednesday September 14th to attend this event. Please register here
Agenda
8:30-9:00 Registration and Refreshments
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing
9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analysis
- 9:05 - 9:20 Logging in and uploading data to Galaxy
- 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS
- 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS
- 10:30 - 11:00 Galaxy Workflows & Advanced Topics
11:00-1:00 Lunch on your own
1:00-2:00 - Research Computing Resources Session
- 1:00 - 1:20 Overview of Research Computing Resources -- John-Paul Robinson, UAB IT Research Computing
- 1:20 - 1:40 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
- 1:40 - 2:00 Hadoop on Cheaha -- John-Paul Robinson, UAB IT Research Computing
2:00-2:10 - break
2:10-3:20 - Developing Research Computing Solutions Session
- 2:10 - 2:40 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
- 2:40 - 3:00 - RESTful Web Service Interfaces -- Don Dempsey, CCTS
- 3:00 - 3:30 - MatLab for Managing Workflows PDF -- Thomas Anthony, UAB IT Research Computing - SoE