VisualBrainCore

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(Information For CINL Brain Core)
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Our website has changed slightly to reflect our new name.  The original Visual Brain Core was made possible by a generous grant from UAB's HSF/GEF grant progam.  Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the "visual" from our name.  Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.
  
==Visual Brain Core Mission==
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Our new website is here: [https://docs.uabgrid.uab.edu/wiki/Brain_Core https://docs.uabgrid.uab.edu/wiki/Brain_Core]
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.
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[[The 5 aims of the Visual Brain Core]]
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[[File:Core.png|thumb|500px]]
 
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[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]
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==Information For CINL Brain Core==
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===CINL Brain Core Personnel and Office Hours===
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*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.
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**'''Office Hours:
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**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''
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** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''
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===CINL Brain Core Seminar Series and Neuroimaging Journal Club===
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Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120. 
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We will discuss new ideas and techniques in brain imaging.
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The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. 
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[[List of speakers in Visual Brain Core Seminar Series]]
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===For Use in Grant Proposals:===
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The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].
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===Mailing List:===
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To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''
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===[[BrainhackUAB]]===
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===[[Other information]]===
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==Neuroimaging at UAB==
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===UAB Neuroimaging Facilities===
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[[Civitan International Neuroimaging Laboratory]]
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[[UAB-HSF MEG Laboratory]]
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[[Small Animal Imaging Shared Facility]]
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Equipment for collecting behavioral data during Neuroimaging
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*[http://www.sr-research.com/EL_1000.html Eye Tracker]
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===Neuroimaging and Systems Neuroscience Labs at UAB===
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*[http://www.markbolding.com/ Bolding Lab]
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*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]
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*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]
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*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]
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*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]
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*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]
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*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]
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*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]
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*[http://labs.uab.edu/kwon/ Kwon Lab]
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*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]
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*[http://www.mcconathylab.com/ McConathy Lab]
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*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]
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*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]
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*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]
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*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]
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*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]
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(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)
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Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.
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===Cluster Computing Environment at UAB: Cheaha===
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* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster
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* [[Cheaha]] - background information on the cluster useful for grants and publications
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===UAB-Auburn University Collaboration for Neuroimaging===
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'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''
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'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''
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'''UAB & Auburn Neuroimaging Journal Club'''
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*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu
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'''[[UAB & Auburn Neuroimaging Retreat]]'''
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[[Photos]]
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==How To...==
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===Computer and coding related how-to's===
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[[Using Linux]]
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[[Matlab]]
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[[Psychtoolbox]]
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[[Coding Help]]
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[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]
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*[[Unix shortcuts]]
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*[[Eye Tracker]]
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===fMRI related how-to's and important links===
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[[General Information]]
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[[Tools]]
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[[Brain atlases]]
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[[Cool Websites for Beginners]]
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[[fMRI statistics]]
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===UAB Neuroimaging Tools and How-To's (requires blazer id)===
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[[Imaging Protocols]]
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[[Analysis Scripts]]
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[[Behavioral data analysis techniques]]
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[[Institutional Review Board]]
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[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]
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Revision as of 22:30, 4 January 2018

Our website has changed slightly to reflect our new name. The original Visual Brain Core was made possible by a generous grant from UAB's HSF/GEF grant progam. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the "visual" from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.

Our new website is here: https://docs.uabgrid.uab.edu/wiki/Brain_Core

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