File list

Jump to navigation Jump to search

This special page shows all uploaded files.

File list
First pagePrevious pageNext pageLast page
Date Name Thumbnail Size User Description Versions
20:06, 15 September 2011 SamBamFileFormatFlags.jpg (file) 42 KB Ozborn@uab.edu SAM format flags 1
19:40, 15 September 2011 FastQTrimmerRun.jpg (file) 23 KB Ozborn@uab.edu CMV 21950R being trimmed from 3' 1
19:25, 15 September 2011 DrawQualityScoreBoxplot.jpg (file) 10 KB Ozborn@uab.edu Run box plot 2
19:21, 15 September 2011 QualityStatsResults.jpg (file) 27 KB Ozborn@uab.edu   1
19:17, 15 September 2011 RunComputeQualityStats.jpg (file) 9 KB Ozborn@uab.edu   1
18:47, 15 September 2011 FastQCRunSettings.jpg (file) 22 KB Ozborn@uab.edu   1
18:08, 15 September 2011 DataLibraryVacWRFastQ.jpg (file) 56 KB Ozborn@uab.edu   1
15:55, 15 September 2011 PileupFiltering100Reads.jpg (file) 45 KB Ozborn@uab.edu Pileup run settings for Vaccinia WR 1
05:11, 15 September 2011 FilterRunVacWR.jpg (file) 13 KB Ozborn@uab.edu How to filter a SAM file for SNPs versus reference 1
04:21, 15 September 2011 SNPEffResults.jpg (file) 16 KB Ozborn@uab.edu SNP Results for Vaccinia WR 1
04:18, 15 September 2011 SNPEffCoverage.jpg (file) 69 KB Ozborn@uab.edu For a vaccinia WR 1
03:45, 15 September 2011 SNPEff.jpg (file) 54 KB Ozborn@uab.edu SNPEff run settings 1
03:08, 15 September 2011 GeneratePileup.jpg (file) 56 KB Ozborn@uab.edu Generate pileup for Vaccinia, call consensus 1
22:35, 14 September 2011 Sam2bam.jpg (file) 12 KB Ozborn@uab.edu Conversion of SAM file to BAM 1
22:35, 14 September 2011 Flagstat.jpg (file) 14 KB Ozborn@uab.edu Flag stat on BAM files 1
21:52, 14 September 2011 Bwa run cmv 227r.jpg (file) 52 KB Ozborn@uab.edu BWA run of VAC WR CMV 227R 1
21:33, 14 September 2011 Bwa run cmv 21950r.jpg (file) 49 KB Ozborn@uab.edu Running BWA on CMV 21950R in UAB Galaxy 1
21:08, 14 September 2011 Cmv21950r 3 1 original boxplot.jpg (file) 60 KB Ozborn@uab.edu   2
20:58, 14 September 2011 Cmv21950r 3 1 trimmed boxplot.jpg (file) 58 KB Ozborn@uab.edu CMV 21950R after trimming one base off the end. 1
20:25, 14 September 2011 ComputeQualityStatsCMV21950R 3 1.jpg (file) 86 KB Ozborn@uab.edu Image of running computation of quality stats 1
22:31, 13 September 2011 CMV VAC WR 3 2 base quality.jpg (file) 57 KB Ozborn@uab.edu CMV_VAC_WR_3_2 box and whiskers plot from FastQC 1
21:31, 13 September 2011 DataType.jpg (file) 49 KB Ozborn@uab.edu Data attributes for a vaccinia virus fastq file from the history pane. 1
21:29, 13 September 2011 Ha gsl insert group.png (file) 79 KB Curtish@uab.edu Example insert fragment length file from HudsonAlpha GSL 1
21:26, 13 September 2011 HistoryPane.jpg (file) 25 KB Ozborn@uab.edu What your history pane should look like after linking in the data. 1
17:51, 13 September 2011 UploadLinkDataFilesGUI.jpg (file) 98 KB Ozborn@uab.edu Picture of linking in directory of files to use in Galaxy 1
19:52, 9 September 2011 Rcday2011-flyer.pdf (file) 43 KB Ppreddy@uab.edu 2011 Research Computing Day (Sep 15) and HPC Bootcamp (Sep 16) flyer 1
16:19, 9 September 2011 CI agenda 15Sept2011.pdf (file) 98 KB Jpr@uab.edu Research Computing Day September 15, 2011, Agenda Handout 1
14:30, 7 September 2011 Cheaha parallel config.png (file) 96 KB Tanthony@uab.edu new version without Thomas Anthony in the data location path 2
14:17, 7 September 2011 2011 config mngr.png (file) 142 KB Tanthony@uab.edu Maltab config manager new.. R2011 a 1
14:15, 7 September 2011 Matlab-configuration-manager.jpg (file) 60 KB Tanthony@uab.edu new version of config manager R2011a 2
14:10, 7 September 2011 Validation.png (file) 62 KB Tanthony@uab.edu new version of validation 2
15:08, 24 August 2011 HighAvailabilityOverview-MySQL-HA-Solutions-20110823.pdf (file) 127 KB Ppreddy@uab.edu Overview of HA - components, solutions, and environments. Also has notes regarding each of the components of HA 1
18:31, 26 July 2011 Neuroimaging.jpg (file) 51 KB Nhutche@uab.edu   1
16:45, 15 July 2011 Developing-uab-cloud.pdf (file) 1.95 MB Jpr@uab.edu UAB CI Day 2010, Developing the UAB Cloud presentation 1
16:41, 15 July 2011 Uab-research-core-day-2010-horz-final.pdf (file) 5.11 MB Jpr@uab.edu Poster from UAB Research Core Day highlighting UAB IT Research Computing Support 1
18:15, 14 June 2011 Gromacs benchmark img3 Gromacs ns.png (file) 19 KB Tanthony@uab.edu Page: Gromacs Benchmark, image 3 Ns/day speedup GFLops Cheaha DMC and Biowulf 1
17:57, 14 June 2011 Gromacs Benckmark img2 Gromacs efficiency.png (file) 8 KB Tanthony@uab.edu Page: Gromacs Bench mark, Image 2, Efficiency Cheaha DMC Biowulf 1
17:42, 14 June 2011 Gromacs Benchmark img1 Gromacs wall.png (file) 19 KB Tanthony@uab.edu page: Gromacs Benchmarks image 1 Gromacs wall time cheaha dmc and biowulf 1
19:45, 3 June 2011 Crazy eeg.jpg (file) 9 KB Nhutche@uab.edu   1
16:07, 31 May 2011 NAMD benchmark image 6 Effciency combined AM.png (file) 17 KB Tanthony@uab.edu   4
16:52, 26 May 2011 NAMD benchmark img6 Efficiency gen2 gen3 ib.png (file) 7 KB Tanthony@uab.edu Page: NAMD benchmark image 6 Efficiency Gen 2 and Gen 3 Cheaha 2.8 IB 1
16:50, 26 May 2011 NAMD benchmark img5 Days gen2 gen3 infiniband.png (file) 7 KB Tanthony@uab.edu Page: NAMD Benchmark image 5 Days/ns Gen 2 Gen 3 hardware on Cheaha 2.8 IB 1
16:19, 26 May 2011 NAMD benchmark img4 Ib eth efficiency 2.8.png (file) 7 KB Tanthony@uab.edu Page: NAMD benchmark image 4 Inifiniband vs ethernet efficiency 2.8 1
16:17, 26 May 2011 NAMD benchmark img3 Ib eth days ns 2.8.png (file) 7 KB Tanthony@uab.edu Page: NAMD benchmark image 3 Infiniband vs ethernet on gen3 using 2.8 1
14:11, 26 May 2011 NAMD benchmark img2 Efficiency cheaha dmc biowulf.png (file) 18 KB Tanthony@uab.edu Page: NAMD_benchmarks, image 2, Efficiency of Cheaha, Biowulf, and DMC 1
13:42, 26 May 2011 NAMD benchmark img1 Days cheaha dmc biowulf.png (file) 20 KB Tanthony@uab.edu Page: NAMD Benchmark Fig1. Days/ns Cheaha, Biowuld, and DMC 1
14:20, 31 March 2011 Screen1.png (file) 320 KB Tanthony@uab.edu Reverted to version as of 18:19, 30 March 2011 3
18:47, 30 March 2011 Screen10.png (file) 82 KB Tanthony@uab.edu matlab activation 1
18:47, 30 March 2011 Screen9.png (file) 104 KB Tanthony@uab.edu matlab install 1
18:42, 30 March 2011 Screen8.png (file) 143 KB Tanthony@uab.edu install using the internet 1
First pagePrevious pageNext pageLast page