User contributions for Ppreddy@uab.edu
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29 June 2012
- 20:0120:01, 29 June 2012 diff hist 0 N File:Jbasney-dissert-condensed.pdf No edit summary current
21 June 2012
- 16:4816:48, 21 June 2012 diff hist 0 N File:15-09 Buetow.pdf No edit summary current
11 June 2012
- 20:0620:06, 11 June 2012 diff hist +1,339 GalaxyFAQ →When I hit Execute from Galaxy, does that mean the job is running on the cluster?: Add information and steps involved in the run states of a job launched from galaxy web interface current
- 19:4919:49, 11 June 2012 diff hist +849 GalaxyFAQ →I've set up a Personal Galaxy, now what?: add information and links on running jobs and tutorials to follow as the next step to installing personal galaxy
- 19:3319:33, 11 June 2012 diff hist +2 GalaxyFAQ →Where are the log files (stdout/stderr) for the job executed from Personal Galaxy?: move text from new line to the list definition
- 17:3017:30, 11 June 2012 diff hist +1,147 GalaxyFAQ →Where are the log files (stdout/stderr) for the job executed from Personal Galaxy?: explanation after personal investigations and response from psi galaxy-user uab galaxy-dev
8 June 2012
- 14:4014:40, 8 June 2012 diff hist +13 GalaxyFAQ turn sub heading to question
7 June 2012
- 19:0119:01, 7 June 2012 diff hist +237 GalaxyFAQ add 3 more questions
- 17:4717:47, 7 June 2012 diff hist +60 GalaxyFAQ Fix sentence formation
- 17:4217:42, 7 June 2012 diff hist +8 GalaxyFAQ add TOC macro
- 17:4117:41, 7 June 2012 diff hist −2 m GalaxyFAQ →Error: channel 3: open failed: connect failed: Connection refused
- 17:4017:40, 7 June 2012 diff hist +1 m GalaxyFAQ →Error: channel 3: open failed: connect failed: Connection refused
- 17:3817:38, 7 June 2012 diff hist +850 N GalaxyFAQ start GalaxyFAQ with first question on ssh port forwarding error
25 January 2012
- 21:3821:38, 25 January 2012 diff hist 0 Mediawiki →Interwiki Links: correct syntax current
- 21:2521:25, 25 January 2012 diff hist +423 Mediawiki →Wiki Owners: add users, groups management and editing interwiki links
- 21:1721:17, 25 January 2012 diff hist +1,020 Mediawiki change End Users to Users and add Wiki Owners section with group management instrux
- 20:5220:52, 25 January 2012 diff hist +22 Mediawiki →End Users: Modify text to point to mediawiki help pages
- 20:3720:37, 25 January 2012 diff hist −2,387 Mediawiki →Developers: move developer content to MediawikiDev
- 20:3420:34, 25 January 2012 diff hist +2,460 N MediawikiDev copy developer content from Mediawiki current
- 20:3120:31, 25 January 2012 diff hist +22 Documentation →Developer Guide: add MediawikiDev link below Cross Platform LAMP stack
24 October 2011
- 22:2022:20, 24 October 2011 diff hist +313 N Git FAQ start stub for Git_FAQ current
5 October 2011
- 17:5717:57, 5 October 2011 diff hist −2 GitRepoAccessOnUABgrid add numbered lists
- 17:5517:55, 5 October 2011 diff hist +1,533 N GitRepoAccessOnUABgrid initial wiki stub for git repo access on uabgrid
- 16:0116:01, 5 October 2011 diff hist +160 FreeSurfer →Overview: add latest version inof and release notes link to freesurfer
- 15:5915:59, 5 October 2011 diff hist +135 FSL add latest version info and download link for fsl
4 October 2011
- 20:0320:03, 4 October 2011 diff hist +128 FSL separate content into different headings
- 19:5919:59, 4 October 2011 diff hist +351 FreeSurfer change heading names, add links to ssh config for linux and mac
29 September 2011
- 17:3817:38, 29 September 2011 diff hist +94 N File:Ha-20110816.odp mysql high availability presentation in openoffice format. Test for uploading file of type odp current
13 September 2011
- 02:2902:29, 13 September 2011 diff hist +2,928 N API initial commit for api wiki current
12 September 2011
- 21:0821:08, 12 September 2011 diff hist +12 Documentation →Developer Guide: add API section
9 September 2011
- 19:5519:55, 9 September 2011 diff hist +73 UAB Research Computing Day 2011 →Handout and Promotional Materials: add rcday and hpc bootcamp flyer
- 19:5219:52, 9 September 2011 diff hist +68 N File:Rcday2011-flyer.pdf 2011 Research Computing Day (Sep 15) and HPC Bootcamp (Sep 16) flyer current
24 August 2011
- 15:0815:08, 24 August 2011 diff hist +111 N File:HighAvailabilityOverview-MySQL-HA-Solutions-20110823.pdf Overview of HA - components, solutions, and environments. Also has notes regarding each of the components of HA current
26 July 2011
- 23:3323:33, 26 July 2011 diff hist +88 MacNotes →Useful Links: add link to mac automator tool current
9 June 2011
- 21:4521:45, 9 June 2011 diff hist +41 Template:Cluster Application add named parameters to versions section current
19 April 2011
- 20:5520:55, 19 April 2011 diff hist +201 SubversionOverHttps →Edit SVN servers file: add IE specific global setting to svn/servers file
- 20:5220:52, 19 April 2011 diff hist +43 SubversionOverHttps →Download UABgrid CA certificate: add IE's mechanism of saving cacert i.,e with file extension - .cer
14 December 2010
- 17:5517:55, 14 December 2010 diff hist +186 N DeployingGalaxyToAmazonEC2 initial wiki page for user exp on GC to EC2 current
- 17:3817:38, 14 December 2010 diff hist −18 Wordpress delete extra ref section
- 17:3817:38, 14 December 2010 diff hist −13 Wordpress →Download WordPress: delete change dir from preformatted text
- 17:3717:37, 14 December 2010 diff hist +2,346 Wordpress →Developers: add wp install steps
- 16:5016:50, 14 December 2010 diff hist +199 Wordpress →End Users: add end user info
- 16:4916:49, 14 December 2010 diff hist +221 Wordpress →Overview: add wp intro
- 16:3716:37, 14 December 2010 diff hist 0 Mediawiki →References: indent refs
- 16:3616:36, 14 December 2010 diff hist +260 Mediawiki →References
- 16:3216:32, 14 December 2010 diff hist +322 Mediawiki →Run Mediawiki installer: add mediawiki installer finish steps
10 December 2010
- 22:1222:12, 10 December 2010 diff hist +256 Mediawiki start on mediawiki installer steps
- 18:5218:52, 10 December 2010 diff hist +2,626 Mediawiki fill in initial details- text and sections
8 December 2010
- 20:5320:53, 8 December 2010 diff hist +76 N Mediawiki stub wiki for mediawiki
- 20:5220:52, 8 December 2010 diff hist +76 N Wordpress stub wiki forwordpress
- 20:3020:30, 8 December 2010 diff hist −361 Trac →Create a Trac project: rm repotype and repopath for initenv command current
- 20:2920:29, 8 December 2010 diff hist −245 Trac →Install Trac: delete plugin install steps, as this would further require editing of trac.ini, so keeping it simple for now
7 December 2010
- 15:3715:37, 7 December 2010 diff hist −234 Galaxy delete xampp details
6 December 2010
- 17:3517:35, 6 December 2010 diff hist +482 Trac add links to headers for Mac section
- 17:0517:05, 6 December 2010 diff hist +8 Trac indent numbered lists and preformatted text
- 17:0117:01, 6 December 2010 diff hist −568 Trac →Developers: mv setuptools to Python wiki and indent numbered lists
- 16:2916:29, 6 December 2010 diff hist +654 Python mv setuptools install from trac wiki
4 December 2010
- 00:0500:05, 4 December 2010 diff hist +60 Welcome add doc link to collaboration
3 December 2010
- 21:3821:38, 3 December 2010 diff hist +33 Documentation →Developer Guide: add dev tools section
- 21:3721:37, 3 December 2010 diff hist +92 Documentation →User Guide: add sub headers and order alphabetically
- 21:2221:22, 3 December 2010 diff hist +244 Trac →Install Trac: add easy_install for git, toc, and pygments
- 21:1321:13, 3 December 2010 diff hist +3,132 Trac →Developers: add trac project create steps
- 19:3619:36, 3 December 2010 diff hist +273 Python add references
- 19:3419:34, 3 December 2010 diff hist −5 Python →Customize Python Packages Install Location to $HOME: change header
- 19:3319:33, 3 December 2010 diff hist +2,614 N Python initial doc for python
- 18:0118:01, 3 December 2010 diff hist +1,293 Trac →Developers: add python info for mac
2 December 2010
- 20:0820:08, 2 December 2010 diff hist −38 Trac →Developers: change sentence formation
- 20:0120:01, 2 December 2010 diff hist +20 Galaxy →Developers: add run step
- 19:5819:58, 2 December 2010 diff hist 0 Galaxy →Mac OS X: change bullets type
- 19:5419:54, 2 December 2010 diff hist +3,687 N XAMPP initial doc for xampp current
- 19:3919:39, 2 December 2010 diff hist +3,169 N Galaxy initial doc for galaxy
- 18:5118:51, 2 December 2010 diff hist +14 Documentation →User Guide: add galaxy to list of apps
30 November 2010
- 23:3923:39, 30 November 2010 diff hist +98 Trac →End Users: point to help links to end users
- 22:4422:44, 30 November 2010 diff hist +1,280 N Trac initial doc for Trac
- 21:0021:00, 30 November 2010 diff hist +12 Documentation →User Guide: add trac to the list of apps
10 August 2010
- 20:1020:10, 10 August 2010 diff hist +42 FreeSurfer →Set up FreeSurfer Environment: add fsl wiki link
- 20:0220:02, 10 August 2010 diff hist +507 N FSL initial fsl content
- 19:4319:43, 10 August 2010 diff hist +11 Documentation →User Guide: add fsl
2 August 2010
- 18:3718:37, 2 August 2010 diff hist +418 WorkingWithPutty →Set Environment Variables: add creation of new env var current
- 18:3018:30, 2 August 2010 diff hist +23 N File:Putty-env1.png create new PATH env var current
- 18:2418:24, 2 August 2010 diff hist −17 WorkingWithPutty →PuTTY: change path of putty install dir
- 15:5815:58, 2 August 2010 diff hist +202 FreeSurfer add working with putty url
- 15:5415:54, 2 August 2010 diff hist +272 FreeSurfer →Clean-up scratch: link to file transfer with psftp steps
- 15:3715:37, 2 August 2010 diff hist +11,166 N WorkingWithPutty add putty setup and file transfer with psftp
- 15:0515:05, 2 August 2010 diff hist +21 N File:Psftp2.png open psftp connection current
- 15:0015:00, 2 August 2010 diff hist +18 N File:Psftp1.png start psftp window current
- 14:5514:55, 2 August 2010 diff hist +73 N File:Putty-env.png how to add installed tool paths to user environment variables in Windows. current
30 July 2010
- 22:1022:10, 30 July 2010 diff hist +134 FreeSurfer →Create job submission script: add headers
- 22:0622:06, 30 July 2010 diff hist +308 FreeSurfer →Create job submission script: add refs
- 21:5821:58, 30 July 2010 diff hist +1 FreeSurfer →Create job submission script: change sleep time
- 21:5621:56, 30 July 2010 diff hist +3 FreeSurfer →Create job submission script: delete my email address from job script
- 21:5521:55, 30 July 2010 diff hist +87 FreeSurfer →Create job submission script: add jobs dir
- 21:5421:54, 30 July 2010 diff hist +170 FreeSurfer →Create job submission script
- 21:4821:48, 30 July 2010 diff hist +301 FreeSurfer →Create job submission script: modify recon-all submit script
29 July 2010
- 14:1614:16, 29 July 2010 diff hist +146 FreeSurfer →Run example recon_all process: add example img to download
27 July 2010
- 21:3421:34, 27 July 2010 diff hist +254 N File:Example.nii.zip File is an example brain mri in Nifti (.nii) format to perform recon-all analysis. Ref: http://www.barre.nom.fr/medical/samples/files/CT-MONO2-16-brain.gz http://www.cabiatl.com/mricro/dicom/index.html http://www.cabiatl.com/mricro/mricron/dcm2nii.html current
- 21:0621:06, 27 July 2010 diff hist +165 FreeSurfer →Prep for running example recon_all process: add sections to prep for running recon-all
- 17:3717:37, 27 July 2010 diff hist +242 FreeSurfer format text, add note for fsl
26 July 2010
- 21:5921:59, 26 July 2010 diff hist +431 FreeSurfer add toc, extra headers
- 19:4919:49, 26 July 2010 diff hist +283 FreeSurfer →Steps to run FreeSurfer: steps to source bashrc and execute job script
28 June 2010
- 19:1219:12, 28 June 2010 diff hist −19 MacNotes →References for Eclipse on Mac: change section title
- 19:1219:12, 28 June 2010 diff hist −28 MacNotes →References for installing MySQL on Mac: change section title
- 19:1219:12, 28 June 2010 diff hist −7 MacNotes →Eclipse on Mac: change section title
- 19:1119:11, 28 June 2010 diff hist −7 MacNotes →MySQL on Mac: change section title
- 19:1119:11, 28 June 2010 diff hist +445 MacNotes add java-1.5 install section
9 June 2010
- 19:3019:30, 9 June 2010 diff hist +439 MacNotes →Create pidof command: add new section to create pidof command on Mac
11 May 2010
- 17:5317:53, 11 May 2010 diff hist +137 MATLAB DCS →How to run my code: add ref
- 17:4117:41, 11 May 2010 diff hist +36 MATLAB DCS →MATLAB from the Command Line: add examples to matlab desktop
- 17:3817:38, 11 May 2010 diff hist +40 MATLAB DCS →Linux: add editor
- 17:3617:36, 11 May 2010 diff hist +112 MATLAB DCS →Linux: add linux ssh user id config
- 17:3317:33, 11 May 2010 diff hist +46 MATLAB DCS →ParFor Parallel Example: add new section run my code
9 May 2010
- 22:5022:50, 9 May 2010 diff hist +75 MATLAB DCS →Parallel Computing Toolbox Configuration: add Matlab client start from Mac
- 22:4822:48, 9 May 2010 diff hist +29 MATLAB DCS →Parallel Computing Toolbox Configuration: add run ssh-agent for Mac
- 22:4522:45, 9 May 2010 diff hist −11 MATLAB DCS →MATLAB Submit Functions: add MATLAB path on Mac
- 22:1122:11, 9 May 2010 diff hist +369 m MATLAB DCS →Mac: add scp of rsa-key to Cheaha from Mac
16 April 2010
- 19:1719:17, 16 April 2010 diff hist +387 MacNotes modify patch for Jboss run.sh
- 18:3718:37, 16 April 2010 diff hist +1,041 MacNotes add jboss on mac section
24 March 2010
- 18:1518:15, 24 March 2010 diff hist +367 MacNotes add mysql install ref
25 February 2010
- 14:5114:51, 25 February 2010 diff hist +1,020 MacNotes notes on Eclipse config for JVM heap size on Mac
4 January 2010
- 21:4321:43, 4 January 2010 diff hist +121 SPPARKS add submission and monitor info
- 21:4321:43, 4 January 2010 diff hist +122 MrBayes add submission and monitor info
- 21:4221:42, 4 January 2010 diff hist +122 CNS add submission and monitor info current
- 21:4221:42, 4 January 2010 diff hist +119 FreeSurfer add submission and monitor info
- 21:3221:32, 4 January 2010 diff hist −4 SPPARKS fix typo
- 21:3121:31, 4 January 2010 diff hist +1,272 N SPPARKS initial:spparks
- 21:2321:23, 4 January 2010 diff hist +541 N Impute initial:impute current
- 21:1021:10, 4 January 2010 diff hist +1,657 N MrBayes initial:mrbayes
- 20:3520:35, 4 January 2010 diff hist +1,057 N CNS initial:cns
- 19:2219:22, 4 January 2010 diff hist +350 FreeSurfer add changes made to the recon-all submission script
15 December 2009
- 22:1622:16, 15 December 2009 diff hist +167 FreeSurfer FreeSurfer: add post job steps
- 22:1322:13, 15 December 2009 diff hist +2,253 N FreeSurfer FreeSurfer app: initial stub
- 21:0521:05, 15 December 2009 diff hist +77 Documentation add to the list of applications
24 August 2009
- 20:2920:29, 24 August 2009 diff hist +1 MacNotes →Tips for getting Mac-friendly or otherwise: fix typo
- 20:2820:28, 24 August 2009 diff hist +202 MacNotes →Tips for getting Mac-friendly or otherwise: print screen kb shortcuts
- 19:1519:15, 24 August 2009 diff hist +2 MacNotes →Tips for getting Mac-friendly or otherwise: rephrase
- 18:5518:55, 24 August 2009 diff hist +13 MacNotes →Tips for getting Mac-friendly or otherwise: fix typo
- 18:4518:45, 24 August 2009 diff hist +289 MacNotes →Image Editor: add gimp deps
- 18:3718:37, 24 August 2009 diff hist +51 MacNotes →Open Source Software: add port man command
- 18:2018:20, 24 August 2009 diff hist +315 MacNotes →Tips for getting Mac-friendly or otherwise: sentence end keys
- 18:1418:14, 24 August 2009 diff hist +104 MacNotes →Image Editor: add MacPorts install link
- 18:1018:10, 24 August 2009 diff hist +548 MacNotes →Software Install: add gimp install steps
- 18:0318:03, 24 August 2009 diff hist +775 MacNotes →Open Source Software: add Macports install steps
- 16:3516:35, 24 August 2009 diff hist +8 MacNotes →MIME Edit Add-on to Thunderbird: fix typo
- 16:3416:34, 24 August 2009 diff hist +1,432 MacNotes →Software Install: add thunderbird and add-on install steps
11 August 2009
- 15:4715:47, 11 August 2009 diff hist +3 BLAST fix formatting current
- 15:4315:43, 11 August 2009 diff hist +867 N BLAST BLAST:initial wiki with intro, ref
27 October 2008
- 20:3220:32, 27 October 2008 diff hist +7 AgileProgramming/xp →History
- 20:3220:32, 27 October 2008 diff hist 0 AgileProgramming/xp →History
- 20:1720:17, 27 October 2008 diff hist +3 AgileProgramming/xp fixed links
- 20:1220:12, 27 October 2008 diff hist −7 AgileProgramming/xp →History
- 20:1120:11, 27 October 2008 diff hist +1 AgileProgramming/xp fixed bullets and indentation
- 20:0920:09, 27 October 2008 diff hist −13 AgileProgramming/xp fixed references
- 20:0820:08, 27 October 2008 diff hist +460 Template:Reflist references template current
- 20:0320:03, 27 October 2008 diff hist +11 Template:Reflist references
- 19:1819:18, 27 October 2008 diff hist −160 Template:Reflist No edit summary
- 19:1819:18, 27 October 2008 diff hist −23 AgileProgramming/xp →History
- 19:1719:17, 27 October 2008 diff hist −17 AgileProgramming/xp →What is Agile Methodology?
- 19:1619:16, 27 October 2008 diff hist +160 N Template:Reflist ~~~~references
- 19:1519:15, 27 October 2008 diff hist +2,455 N AgileProgramming/xp ~~~~Agile Methodology