User contributions for Ozborn@uab.edu
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28 August 2020
- 19:0319:03, 28 August 2020 diff hist +861 Jupyter More information on custom building conda environments on cheahea
21 April 2020
- 16:4116:41, 21 April 2020 diff hist +20 m UAB Openstack Tutorial →Create Application Credentials current
28 February 2020
- 17:2917:29, 28 February 2020 diff hist +526 m UAB Openstack Tutorial Add info on getting creds
- 17:1717:17, 28 February 2020 diff hist +3,373 N UAB Openstack Tutorial Initial Page Creation
8 February 2020
- 01:1901:19, 8 February 2020 diff hist +141 m Jupyter →Build your conda environment: How to update
7 February 2020
- 02:3302:33, 7 February 2020 diff hist +12 m Jupyter --no-builds option
15 January 2020
- 03:2603:26, 15 January 2020 diff hist +64 Jupyter →Build your conda environment
- 03:2503:25, 15 January 2020 diff hist +85 Jupyter →Build your conda environment
- 03:2203:22, 15 January 2020 diff hist +76 N File:JupyterCustomEnv.jpeg File showing what a custom conda environment looks like in Jupyter On Demand current
- 03:2103:21, 15 January 2020 diff hist +55 Jupyter →Set up your cheaha .condarc file
- 03:2103:21, 15 January 2020 diff hist +2 Jupyter →Add ipkernel to your conda environment
- 03:2003:20, 15 January 2020 diff hist +37 Jupyter →Export YAML file containing your environment to cheaha
- 03:2003:20, 15 January 2020 diff hist +84 Jupyter →Export YAML file containing your environment to cheaha
- 03:1903:19, 15 January 2020 diff hist +257 Jupyter →Adding Custom Conda Environments to Jupyter
- 03:1703:17, 15 January 2020 diff hist +667 Jupyter Added Custom Jupyter Conda Environments
28 October 2019
- 02:0802:08, 28 October 2019 diff hist +33 Jupyter →Jupyter On Demand
- 02:0702:07, 28 October 2019 diff hist +16 N File:LaunchJupyter.png Button to press. current
- 02:0202:02, 28 October 2019 diff hist +43 Jupyter Adding numbering
- 01:5701:57, 28 October 2019 diff hist +187 Jupyter →Jupyter On Demand
- 00:0500:05, 28 October 2019 diff hist +60 Jupyter Updated GPU instructions
- 00:0300:03, 28 October 2019 diff hist +27 N File:PascalNodes.png Arguments for getting a GPU current
- 00:0300:03, 28 October 2019 diff hist +43 N File:TestPytorch.png Shows successful pytorch run on pascalnodes current
27 October 2019
- 23:5723:57, 27 October 2019 diff hist +66 N File:PascalNodes.pdf Shows arguments for starting a job using PascaleNodes to get a GPU current
- 23:5723:57, 27 October 2019 diff hist +57 N File:TestPytorch.pdf Shows success test of PyTorch on Jupter Notebook Oct 2019 current
24 October 2019
- 16:1916:19, 24 October 2019 diff hist +17 Jupyter →Jupyter On Demand
- 16:1716:17, 24 October 2019 diff hist +104 Jupyter →Jupyter by Proxy: Warning added
- 16:1616:16, 24 October 2019 diff hist +113 m Jupyter →Jupyter On Demand: Cleanup
- 16:1416:14, 24 October 2019 diff hist +46 Jupyter →Jupyter On Demand
22 October 2019
- 16:3116:31, 22 October 2019 diff hist 0 m Jupyter →Jupyter On Demand
- 16:2616:26, 22 October 2019 diff hist +1 m Jupyter →Jupyter On Demand
- 16:1516:15, 22 October 2019 diff hist +9 m Jupyter Updated Anaconda environment
17 September 2019
- 15:3115:31, 17 September 2019 diff hist +57 Jupyter GPU environment description
- 15:2915:29, 17 September 2019 diff hist +24 N File:JupyterNotebookGPUEnvironment.png Arguments for using GPUs current
- 15:2915:29, 17 September 2019 diff hist +94 Jupyter →Jupyter On Demand
- 15:2415:24, 17 September 2019 diff hist +168 Jupyter →Jupyter On Demand: Cleanup starting Jupyter
- 15:1515:15, 17 September 2019 diff hist +44 N File:JupyterNotebookStart.png Image of starting Jupyter Notebook on cheaha current
- 15:1315:13, 17 September 2019 diff hist +172 m Jupyter →Jupyter On Demand: - environment arguments
31 August 2019
- 22:2122:21, 31 August 2019 diff hist +121 Jupyter On Demand added
30 January 2019
- 17:3817:38, 30 January 2019 diff hist +25 PheDRS →NLP Discovered Patients current
- 17:3117:31, 30 January 2019 diff hist +366 PheDRS →Evidence Code Ontology: Updating NLP
- 17:1917:19, 30 January 2019 diff hist +529 PheDRS →Evidence Code Ontology
- 16:5916:59, 30 January 2019 diff hist +698 PheDRS →Developer Guide to PheDRS Data Loading Criteria: Updating vocabulary meaning.
24 January 2019
- 20:3920:39, 24 January 2019 diff hist +826 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation: Evidence Codes
- 20:2820:28, 24 January 2019 diff hist +5 m PheDRS →Installation / Setup: TODO
18 January 2019
- 20:1920:19, 18 January 2019 diff hist −80 m PheDRS →Developer Guide to PheDRS Data Loading Criteria
- 19:5419:54, 18 January 2019 diff hist +15 m PheDRS →Developer Guide to PheDRS Data Loading Criteria
- 19:5119:51, 18 January 2019 diff hist −65 PheDRS →Developer Guide for Registry Configuration Properties
- 19:4419:44, 18 January 2019 diff hist −153 m PheDRS →Developer Guide for Registry Configuration Properties
- 19:3819:38, 18 January 2019 diff hist −84 PheDRS →Developer Guide for Registry Configuration Properties
- 19:3319:33, 18 January 2019 diff hist +6,091 PheDRS →Developer Guide for Registry Configuration Properties
- 19:2219:22, 18 January 2019 diff hist +107 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation
- 19:1919:19, 18 January 2019 diff hist +708 PheDRS →Registry Configuration: Adding developer guide for registry configuration properties
- 17:0117:01, 18 January 2019 diff hist +53 m PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation
- 16:5716:57, 18 January 2019 diff hist +401 PheDRS →Phenotype Detection Registry System (PheDRS) User Documentation: Documentation Location
- 16:3916:39, 18 January 2019 diff hist +33 PheDRS →Phenotype Detection Registry System
17 January 2019
- 16:4816:48, 17 January 2019 diff hist +785 PheDRS →Phenotype Detection Registry System: Added roles
14 January 2019
- 22:4022:40, 14 January 2019 diff hist +187 PheDRS Placeholders for Content
- 21:2521:25, 14 January 2019 diff hist +2,240 PheDRS CVTERM Prop configuration added
- 19:5819:58, 14 January 2019 diff hist +338 N PheDRS Creation
1 November 2018
- 14:5514:55, 1 November 2018 diff hist −5 Jupyter →3. Copy notebook settings
- 14:5414:54, 1 November 2018 diff hist +352 Jupyter Detailing steps to starting Jupyter
19 October 2018
- 16:3916:39, 19 October 2018 diff hist +26 Jupyter →DeepNLP option
18 October 2018
- 15:3115:31, 18 October 2018 diff hist +227 Jupyter DeepNLP option
11 October 2018
- 19:5519:55, 11 October 2018 diff hist +205 Jupyter Additional information on Python_Virtual_Environment and Anaconda
4 October 2018
- 20:0220:02, 4 October 2018 diff hist +164 Jupyter Added memory heavy option
25 September 2018
- 23:0323:03, 25 September 2018 diff hist +731 N DeepNLP Create documentation for conda module current
12 September 2018
- 16:1616:16, 12 September 2018 diff hist +520 Jupyter Adding GPU info, cleanup
4 September 2018
- 23:0623:06, 4 September 2018 diff hist +71 Jupyter putty port forward link added
- 21:2021:20, 4 September 2018 diff hist +531 Jupyter Windows instructions for connecting and proxying from cheaha
2 September 2018
- 22:4422:44, 2 September 2018 diff hist +266 Jupyter IO data rate fix
- 02:1902:19, 2 September 2018 diff hist +17 m Jupyter Typo fix, bolding relevant bits
29 August 2018
- 16:3516:35, 29 August 2018 diff hist +305 Jupyter →Jupyter on Cheaha
- 16:2616:26, 29 August 2018 diff hist +290 Jupyter →Jupyter on Cheaha
22 August 2018
- 18:2818:28, 22 August 2018 diff hist +68 m Slurm Link to Jupyter Notebook
21 August 2018
- 19:4119:41, 21 August 2018 diff hist +1,028 Jupyter Description of how to run Jupyter Notebook interactively using Anaconda3/5.2.0
17 December 2012
- 21:1721:17, 17 December 2012 diff hist +1,118 NgsCctsBuildAbyss Notes on sucessfull compiling of abyss current
16 September 2011
- 14:1914:19, 16 September 2011 diff hist +73 Galaxy DNA-Seq Tutorial →Comparative Genomics current
- 14:1714:17, 16 September 2011 diff hist +36 Galaxy DNA-Seq Tutorial →Difference from consensus
- 14:1614:16, 16 September 2011 diff hist +13 Galaxy DNA-Seq Tutorial →SNPEff - Variation Summation (optional)
- 14:1514:15, 16 September 2011 diff hist −3 Galaxy DNA-Seq Tutorial →Comparative Genomics
- 14:1414:14, 16 September 2011 diff hist −3 Galaxy DNA-Seq Tutorial →Difference from consensus
- 14:1414:14, 16 September 2011 diff hist −2 Galaxy DNA-Seq Tutorial →Pileup Filter
- 14:1414:14, 16 September 2011 diff hist −2 Galaxy DNA-Seq Tutorial →Finding the Relevant SNPs versus Control
- 06:4606:46, 16 September 2011 diff hist +125 Galaxy DNA-Seq Tutorial →Pileup Filter
- 06:4506:45, 16 September 2011 diff hist +10 Galaxy DNA-Seq Tutorial →SNPEff - Variation Summation
- 06:4406:44, 16 September 2011 diff hist +304 Galaxy DNA-Seq Tutorial →Pileup
- 06:2906:29, 16 September 2011 diff hist +207 Galaxy DNA-Seq Tutorial →Results from SNPEff
- 06:2606:26, 16 September 2011 diff hist +88 Galaxy DNA-Seq Tutorial No edit summary
- 06:2206:22, 16 September 2011 diff hist +164 Galaxy DNA-Seq Tutorial →FastQC Results
- 06:1906:19, 16 September 2011 diff hist +8 Galaxy DNA-Seq Tutorial →FastQC Results
- 06:1706:17, 16 September 2011 diff hist 0 N File:Fastqc summary.jpg No edit summary current
- 06:1306:13, 16 September 2011 diff hist +3 Galaxy DNA-Seq Tutorial →Running FastQC
- 06:1206:12, 16 September 2011 diff hist +154 Galaxy DNA-Seq Tutorial →Metadata - Formatting and Grooming Data
- 05:5505:55, 16 September 2011 diff hist +194 Galaxy DNA-Seq Tutorial →Trimming Reads
- 05:4905:49, 16 September 2011 diff hist −7 Galaxy DNA-Seq Tutorial →Quality Control = Formatting and Grooming Data
- 05:4705:47, 16 September 2011 diff hist +109 Galaxy DNA-Seq Tutorial →Formatting and Grooming Data
- 03:4103:41, 16 September 2011 diff hist +148 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 02:5802:58, 16 September 2011 diff hist +1 Galaxy →Available datasets
- 02:5702:57, 16 September 2011 diff hist +2 Galaxy →Available datasets
15 September 2011
- 21:5321:53, 15 September 2011 diff hist +351 Galaxy DNA-Seq Tutorial No edit summary
- 21:5021:50, 15 September 2011 diff hist 0 N File:SNPEffResultTabular.jpg No edit summary current
- 21:4321:43, 15 September 2011 diff hist +534 Galaxy DNA-Seq Tutorial →Difference from consensus
- 21:3621:36, 15 September 2011 diff hist 0 N File:CMV21950RvsVACWR CompareData.jpg No edit summary current
- 21:3121:31, 15 September 2011 diff hist +472 Galaxy DNA-Seq Tutorial →Locating Relevant SNPs versus Control
- 21:1821:18, 15 September 2011 diff hist +83 Galaxy DNA-Seq Tutorial No edit summary
- 21:1521:15, 15 September 2011 diff hist +13 Galaxy DNA-Seq Tutorial →Linking to data
- 21:1421:14, 15 September 2011 diff hist +41 Galaxy DNA-Seq Tutorial →Pileup
- 21:1421:14, 15 September 2011 diff hist 0 N File:GalaxyTutorialSharedLibrary.jpg No edit summary current
- 21:1321:13, 15 September 2011 diff hist +209 Galaxy DNA-Seq Tutorial →Pileup
- 20:5620:56, 15 September 2011 diff hist +26 Galaxy DNA-Seq Tutorial →Pileup
- 20:5620:56, 15 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial →BAM Conversion
- 20:5420:54, 15 September 2011 diff hist +573 Galaxy DNA-Seq Tutorial →BAM Conversion
- 20:4420:44, 15 September 2011 diff hist +285 Galaxy DNA-Seq Tutorial No edit summary
- 20:3220:32, 15 September 2011 diff hist +106 Galaxy DNA-Seq Tutorial →Other Variant Detection Approaches
- 20:2820:28, 15 September 2011 diff hist −2 Galaxy DNA-Seq Tutorial →Samtools
- 20:2820:28, 15 September 2011 diff hist +116 Galaxy DNA-Seq Tutorial →Variant Analysis
- 20:0920:09, 15 September 2011 diff hist +75 Galaxy DNA-Seq Tutorial No edit summary
- 20:0620:06, 15 September 2011 diff hist +16 N File:SamBamFileFormatFlags.jpg SAM format flags current
- 20:0220:02, 15 September 2011 diff hist +45 Galaxy DNA-Seq Tutorial No edit summary
- 19:5619:56, 15 September 2011 diff hist +153 Galaxy DNA-Seq Tutorial →BAM Conversion
- 19:5119:51, 15 September 2011 diff hist +237 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 19:4619:46, 15 September 2011 diff hist +152 Galaxy DNA-Seq Tutorial →Results
- 19:4319:43, 15 September 2011 diff hist +262 Galaxy DNA-Seq Tutorial →Performing cleanup
- 19:4019:40, 15 September 2011 diff hist +32 N File:FastQTrimmerRun.jpg CMV 21950R being trimmed from 3' current
- 19:3119:31, 15 September 2011 diff hist +226 Galaxy DNA-Seq Tutorial No edit summary
- 19:2719:27, 15 September 2011 diff hist +88 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:2519:25, 15 September 2011 diff hist 0 File:DrawQualityScoreBoxplot.jpg uploaded a new version of "File:DrawQualityScoreBoxplot.jpg": Run box plot current
- 19:2219:22, 15 September 2011 diff hist +35 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:2119:21, 15 September 2011 diff hist 0 N File:QualityStatsResults.jpg No edit summary current
- 19:1819:18, 15 September 2011 diff hist −10 Galaxy DNA-Seq Tutorial →Quality Statistics and Boxplot
- 19:1719:17, 15 September 2011 diff hist 0 N File:RunComputeQualityStats.jpg No edit summary current
- 19:1419:14, 15 September 2011 diff hist +30 Galaxy DNA-Seq Tutorial No edit summary
- 19:1119:11, 15 September 2011 diff hist +98 Galaxy DNA-Seq Tutorial →Reference Genome
- 19:0919:09, 15 September 2011 diff hist +114 Galaxy DNA-Seq Tutorial No edit summary
- 19:0419:04, 15 September 2011 diff hist +465 Galaxy DNA-Seq Tutorial FastQC and Compute stats cleanup
- 18:4718:47, 15 September 2011 diff hist 0 N File:FastQCRunSettings.jpg No edit summary current
- 18:3918:39, 15 September 2011 diff hist +127 Galaxy DNA-Seq Tutorial No edit summary
- 18:3218:32, 15 September 2011 diff hist +115 Galaxy DNA-Seq Tutorial →Reference Genome
- 18:3018:30, 15 September 2011 diff hist +217 Galaxy →Available datasets: Added new datasets
- 18:2118:21, 15 September 2011 diff hist +368 Galaxy DNA-Seq Tutorial No edit summary
- 18:0918:09, 15 September 2011 diff hist +66 Galaxy DNA-Seq Tutorial →Linking to data
- 18:0818:08, 15 September 2011 diff hist 0 N File:DataLibraryVacWRFastQ.jpg No edit summary current
- 15:5615:56, 15 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial Pileup filtering
- 15:5515:55, 15 September 2011 diff hist +35 N File:PileupFiltering100Reads.jpg Pileup run settings for Vaccinia WR current
- 05:1305:13, 15 September 2011 diff hist +75 Galaxy DNA-Seq Tutorial Filtering SNPs
- 05:1105:11, 15 September 2011 diff hist +50 N File:FilterRunVacWR.jpg How to filter a SAM file for SNPs versus reference current
- 04:2204:22, 15 September 2011 diff hist +32 Galaxy DNA-Seq Tutorial No edit summary
- 04:2104:21, 15 September 2011 diff hist +27 N File:SNPEffResults.jpg SNP Results for Vaccinia WR current
- 04:2004:20, 15 September 2011 diff hist +141 Galaxy DNA-Seq Tutorial No edit summary
- 04:1804:18, 15 September 2011 diff hist +17 N File:SNPEffCoverage.jpg For a vaccinia WR current
- 04:1704:17, 15 September 2011 diff hist +214 Galaxy DNA-Seq Tutorial SNPEff separate section
- 03:4703:47, 15 September 2011 diff hist +78 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:4503:45, 15 September 2011 diff hist +19 N File:SNPEff.jpg SNPEff run settings current
- 03:3803:38, 15 September 2011 diff hist +127 Galaxy DNA-Seq Tutorial →BAM Conversion
- 03:3403:34, 15 September 2011 diff hist +153 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0903:09, 15 September 2011 diff hist +107 Galaxy DNA-Seq Tutorial →Variant Analysis
- 03:0803:08, 15 September 2011 diff hist +44 N File:GeneratePileup.jpg Generate pileup for Vaccinia, call consensus current
- 03:0603:06, 15 September 2011 diff hist +20 Galaxy DNA-Seq Tutorial →Looking at differences with SNPEff
14 September 2011
- 22:3622:36, 14 September 2011 diff hist +22 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +29 N File:Sam2bam.jpg Conversion of SAM file to BAM current
- 22:3522:35, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial Flagstat
- 22:3522:35, 14 September 2011 diff hist +22 N File:Flagstat.jpg Flag stat on BAM files current
- 21:5321:53, 14 September 2011 diff hist −1 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:5221:52, 14 September 2011 diff hist +26 N File:Bwa run cmv 227r.jpg BWA run of VAC WR CMV 227R current
- 21:3321:33, 14 September 2011 diff hist +31 Galaxy DNA-Seq Tutorial →Short read alignment to reference genome using BWA
- 21:3321:33, 14 September 2011 diff hist +39 N File:Bwa run cmv 21950r.jpg Running BWA on CMV 21950R in UAB Galaxy current
- 21:0821:08, 14 September 2011 diff hist 0 File:Cmv21950r 3 1 original boxplot.jpg uploaded a new version of "File:Cmv21950r 3 1 original boxplot.jpg" current
- 21:0521:05, 14 September 2011 diff hist +38 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 21:0421:04, 14 September 2011 diff hist 0 N File:DrawQualityScoreBoxplot.jpg No edit summary
- 20:5920:59, 14 September 2011 diff hist +44 Galaxy DNA-Seq Tutorial →Performing cleanup
- 20:5820:58, 14 September 2011 diff hist +47 N File:Cmv21950r 3 1 trimmed boxplot.jpg CMV 21950R after trimming one base off the end. current
- 20:3320:33, 14 September 2011 diff hist +43 Galaxy DNA-Seq Tutorial Adding pre-trim boxplot
- 20:3220:32, 14 September 2011 diff hist +49 N File:Cmv21950r 3 1 original boxplot.jpg Original boxplot before trimming of Vac WR 21950R
- 20:2720:27, 14 September 2011 diff hist +49 Galaxy DNA-Seq Tutorial Adding computation of qualitys stats
- 20:2520:25, 14 September 2011 diff hist +45 N File:ComputeQualityStatsCMV21950R 3 1.jpg Image of running computation of quality stats current
13 September 2011
- 22:3422:34, 13 September 2011 diff hist +212 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 22:3122:31, 13 September 2011 diff hist +48 N File:CMV VAC WR 3 2 base quality.jpg CMV_VAC_WR_3_2 box and whiskers plot from FastQC current
- 22:3022:30, 13 September 2011 diff hist +396 Galaxy DNA-Seq Tutorial →Assessing the quality of the data
- 21:4621:46, 13 September 2011 diff hist +619 Galaxy DNA-Seq Tutorial Formatting data
- 21:3121:31, 13 September 2011 diff hist +70 N File:DataType.jpg Data attributes for a vaccinia virus fastq file from the history pane. current
- 21:2921:29, 13 September 2011 diff hist +362 Galaxy DNA-Seq Tutorial →Linking to data
- 21:2621:26, 13 September 2011 diff hist +66 N File:HistoryPane.jpg What your history pane should look like after linking in the data. current
- 19:3419:34, 13 September 2011 diff hist +437 Galaxy DNA-Seq Tutorial Linking in WR data
- 19:0519:05, 13 September 2011 diff hist +219 UAB Galaxy Workshop Tutorial No edit summary
- 19:0119:01, 13 September 2011 diff hist −48 UAB Galaxy Workshop Tutorial No edit summary
- 18:5718:57, 13 September 2011 diff hist +316 N Galaxy DNA-Seq Tutorial Created page with "= Galaxy DNA-Seq Tutorial = == Linking to data == == Grommin Data == == Assessing the quality of the data == == Performing cleanup == == Short read alignment to referenc..."
- 18:5518:55, 13 September 2011 diff hist −243 UAB Galaxy Workshop Tutorial Moving DNA-Seq and RNA-Seq to their own pages
- 17:5917:59, 13 September 2011 diff hist +123 UAB Galaxy Workshop Tutorial →Getting data into Galaxy: Added links to data uploading, still need cleanup.
- 17:5417:54, 13 September 2011 diff hist +36 UploadLargeData Added image
- 17:5117:51, 13 September 2011 diff hist +57 N File:UploadLinkDataFilesGUI.jpg Picture of linking in directory of files to use in Galaxy current
- 17:4517:45, 13 September 2011 diff hist +265 UAB Galaxy Workshop Tutorial →Getting data into Galaxy
- 17:1217:12, 13 September 2011 diff hist +811 UAB Galaxy Workshop Tutorial →UAB Galaxy DNA-Seq Step-by-Step Tutorial
- 16:4816:48, 13 September 2011 diff hist +19 UAB Galaxy Workshop Tutorial →Overview: Mention workflows
- 16:4416:44, 13 September 2011 diff hist +523 N UAB Galaxy Workshop Tutorial Creation of page
- 16:1216:12, 13 September 2011 diff hist +8 Galaxy Moving tutorials to a separate page
12 September 2011
- 19:5219:52, 12 September 2011 diff hist +406 Galaxy Structure for Tutorial started
8 September 2011
- 16:4716:47, 8 September 2011 diff hist +55 2011 HPC Boot Camp Adding section on logging in and uploading data to galaxy
- 16:2016:20, 8 September 2011 diff hist +9 m Galaxy SRMA mention
- 15:5815:58, 8 September 2011 diff hist 0 m Galaxy Typo
- 15:5715:57, 8 September 2011 diff hist −1,279 Galaxy Major overhaul, added script for updating indices
7 September 2011
- 21:4621:46, 7 September 2011 diff hist +1,817 Galaxy Added bash script
25 August 2011
- 21:3421:34, 25 August 2011 diff hist +549 Galaxy →Adding Novel Datasets
- 21:3021:30, 25 August 2011 diff hist +1,229 Galaxy →Adding Novel Datasets
- 21:1621:16, 25 August 2011 diff hist +15 Galaxy →Adding Novel Datasets
- 21:1121:11, 25 August 2011 diff hist +136 Galaxy →Adding Novel Datasets
- 21:0721:07, 25 August 2011 diff hist +701 Galaxy →Datasets
- 18:0718:07, 25 August 2011 diff hist +212 Galaxy →BWA Indices
- 18:0218:02, 25 August 2011 diff hist +2 Galaxy →Sam and FAIDX indices
- 18:0218:02, 25 August 2011 diff hist +36 Galaxy →BWA Indices
- 18:0118:01, 25 August 2011 diff hist +178 Galaxy →Datasets
- 17:5617:56, 25 August 2011 diff hist +1,121 Galaxy →Datasets
- 17:2917:29, 25 August 2011 diff hist +125 Galaxy →Datasets
- 16:0816:08, 25 August 2011 diff hist +321 Galaxy →Directory Creation
- 15:0615:06, 25 August 2011 diff hist +737 Galaxy Additional information about setting up a new dataset
12 May 2011
- 15:3815:38, 12 May 2011 diff hist −2,970 Galaxy Removed Cheaha Iinstallation Information, now on own wiki
11 May 2011
- 19:3119:31, 11 May 2011 diff hist +44 Galaxy →Next Gen Sequencing Software (order of install on "cheaha"): Top Hat
9 May 2011
- 21:3321:33, 9 May 2011 diff hist +92 m Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 21:3021:30, 9 May 2011 diff hist +165 Galaxy →Next Gen Sequencing Software (order of install on "cheaha"): velevet
- 20:5620:56, 9 May 2011 diff hist +262 Galaxy Added section for NextGen indices
- 20:0720:07, 9 May 2011 diff hist +341 Galaxy →Next Gen Sequencing Software (order of install on "cheaha"): srma
- 19:5719:57, 9 May 2011 diff hist +64 Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 19:5619:56, 9 May 2011 diff hist +169 Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 19:2519:25, 9 May 2011 diff hist +117 m Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 19:0919:09, 9 May 2011 diff hist +317 Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 18:1418:14, 9 May 2011 diff hist +120 Galaxy →Next Gen Sequencing Software (order of install on "cheaha")
- 18:0518:05, 9 May 2011 diff hist +283 Galaxy →Next Gen Sequencing Software
6 May 2011
- 22:1722:17, 6 May 2011 diff hist +96 Galaxy →Next Gen Sequencing Software
5 May 2011
- 21:4021:40, 5 May 2011 diff hist +122 m Galaxy →Next Gen Sequencing Software
- 21:3421:34, 5 May 2011 diff hist +732 Galaxy →Cheaha Cluster Installation Setup Notes
- 21:2821:28, 5 May 2011 diff hist +34 m Galaxy Adding Cheaha Setup Info, reordering hierarchy
1 March 2011
- 19:5519:55, 1 March 2011 diff hist +379 Galaxy Redesign to make things more consistent
- 19:4619:46, 1 March 2011 diff hist +17 m Galaxy No edit summary
- 19:4519:45, 1 March 2011 diff hist +306 Galaxy SNPeff
25 February 2011
- 22:4522:45, 25 February 2011 diff hist +547 Galaxy GNU Plot problems with Galaxy VM
- 22:4122:41, 25 February 2011 diff hist +116 Galaxy →Temporary Directory and the $TEMP variable
23 February 2011
- 21:0021:00, 23 February 2011 diff hist +165 Galaxy LD_LIBRARY_PATH for samtools
16 February 2011
- 23:2523:25, 16 February 2011 diff hist +297 Galaxy Temporary directory and $TEMP variable
- 22:4622:46, 16 February 2011 diff hist −173 Galaxy →Post Processing: Makefile fix
- 22:3722:37, 16 February 2011 diff hist +973 Galaxy →Post Processing: Fix using gzopen64 contaiing zlib
- 20:5520:55, 16 February 2011 diff hist +281 Galaxy →Post Processing: gzopen64 on ubuntu version of zlib
- 20:4220:42, 16 February 2011 diff hist +86 m Galaxy removing zlib-devel
- 20:3920:39, 16 February 2011 diff hist +222 Galaxy →Post Processing: Removing duplicate zlibs
15 February 2011
- 22:5422:54, 15 February 2011 diff hist +882 Galaxy →Post Processing: SAML problems
- 22:4622:46, 15 February 2011 diff hist +101 Galaxy megablast info
- 22:3322:33, 15 February 2011 diff hist +105 Galaxy No edit summary
- 22:3022:30, 15 February 2011 diff hist +86 Galaxy No edit summary
- 22:1822:18, 15 February 2011 diff hist +97 Galaxy No edit summary
- 21:4421:44, 15 February 2011 diff hist +84 m Galaxy No edit summary
- 21:3621:36, 15 February 2011 diff hist +467 Galaxy No edit summary
- 20:3520:35, 15 February 2011 diff hist +259 m Galaxy No edit summary
- 20:2020:20, 15 February 2011 diff hist +273 m Galaxy No edit summary
- 19:4919:49, 15 February 2011 diff hist +722 Galaxy →RPy, R, Atlas, Numpy, BLAS, LAPACK
14 February 2011
- 23:2123:21, 14 February 2011 diff hist +372 Galaxy No edit summary
7 February 2011
- 23:0123:01, 7 February 2011 diff hist +354 Galaxy Bugs
- 21:0921:09, 7 February 2011 diff hist +157 Galaxy Added link for mercurial setup
3 February 2011
- 22:0522:05, 3 February 2011 diff hist +292 Galaxy No edit summary
27 January 2011
- 22:1622:16, 27 January 2011 diff hist +706 Galaxy Adding shib configuration for galaxy
13 January 2011
- 21:5421:54, 13 January 2011 diff hist +183 m Galaxy SMTP
- 20:5820:58, 13 January 2011 diff hist +134 m Galaxy selinux enforcement policy change
- 20:5020:50, 13 January 2011 diff hist +254 m Galaxy No edit summary
6 January 2011
- 22:5722:57, 6 January 2011 diff hist +645 Galaxy Apache and Postgres additions