User contributions for Curtish@uab.edu
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11 April 2018
- 01:5201:52, 11 April 2018 diff hist +675 Box.com bulk transfer add .netrc info
14 September 2017
- 19:2119:21, 14 September 2017 diff hist +42 m Dmtcp Checkpointing add keyword checkpoint
- 19:1719:17, 14 September 2017 diff hist +33 N Dmtcp Curtish@uab.edu moved page Dmtcp to Dmtcp Checkpointing: make this page searchable under the keyword checkpoint current
- 19:1719:17, 14 September 2017 diff hist 0 m Dmtcp Checkpointing Curtish@uab.edu moved page Dmtcp to Dmtcp Checkpointing: make this page searchable under the keyword checkpoint
17 February 2017
- 20:1120:11, 17 February 2017 diff hist +38 Dmtcp Checkpointing add module load
7 February 2017
- 16:5616:56, 7 February 2017 diff hist +85 m Dmtcp Checkpointing No edit summary
- 16:4616:46, 7 February 2017 diff hist +10 m Dmtcp Checkpointing add link to slurm page
- 16:4316:43, 7 February 2017 diff hist +225 N Dmtcp Checkpointing created based on discussion with Thomas Anthony
11 March 2016
- 19:5619:56, 11 March 2016 diff hist +28 Slurm →20160311 Mike H
- 19:5619:56, 11 March 2016 diff hist +1,063 Slurm updates - graphical interactive works
25 February 2016
- 16:2816:28, 25 February 2016 diff hist +88 Box.com bulk transfer →Warning: time stamps
- 16:2216:22, 25 February 2016 diff hist +128 Box.com bulk transfer →Warning: size limitations: raise to 15G
18 February 2016
- 20:2520:25, 18 February 2016 diff hist +116 Box.com bulk transfer →scripted lftp
20 January 2016
- 18:2918:29, 20 January 2016 diff hist +75 Slurm →Interactive Session
15 January 2016
16 December 2015
- 21:2921:29, 16 December 2015 diff hist +341 Box.com bulk transfer →lftp mirror -R example
- 18:2818:28, 16 December 2015 diff hist +813 Box.com bulk transfer No edit summary
- 17:3017:30, 16 December 2015 diff hist +846 Box.com bulk transfer No edit summary
15 December 2015
- 22:1022:10, 15 December 2015 diff hist +151 Box.com bulk transfer →Warning: time stamps
- 20:1820:18, 15 December 2015 diff hist +173 Box.com bulk transfer →Warning: size limitations
- 18:5218:52, 15 December 2015 diff hist +194 Box.com bulk transfer →Warning: size limitations
- 18:4718:47, 15 December 2015 diff hist +21 Box.com bulk transfer →Warning: size limitations
7 December 2015
- 20:4920:49, 7 December 2015 diff hist +1,023 N Box.com bulk transfer start list of FTP programs to push data to box.com
29 July 2015
- 17:1917:19, 29 July 2015 diff hist +587 Cheaha →Hardware: - updates form the email on 4/13/2015 entitled "[hpc-announce] Adding HPC capacity to Cheaha"
20 March 2014
- 16:2216:22, 20 March 2014 diff hist +140 IgvFromComputeNode No edit summary current
- 16:1916:19, 20 March 2014 diff hist +114 IgvFromComputeNode →ssh -X to cheaha
25 February 2014
- 20:1420:14, 25 February 2014 diff hist +63 N UptimeRobot Created page with "Used for uptime testing by http://uptimerobot.com Hello World!" current
24 February 2014
- 18:5618:56, 24 February 2014 diff hist +46 NgsCctsVcflib →Build details current
- 18:5518:55, 24 February 2014 diff hist +1 NgsCctsVcflib →To use
- 18:5518:55, 24 February 2014 diff hist −2 NgsCctsVcflib →To use
- 18:5518:55, 24 February 2014 diff hist +12 NgsCctsVcflib →To use
- 18:5418:54, 24 February 2014 diff hist −6 NgsCctsVcflib No edit summary
- 18:5318:53, 24 February 2014 diff hist +847 N NgsCctsVcflib Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (..."
- 18:1918:19, 24 February 2014 diff hist −30 NgsCcts →Variant Handling current
- 18:1718:17, 24 February 2014 diff hist +124 NgsCcts →Pairwise Sequence Alignment
30 August 2013
- 03:5303:53, 30 August 2013 diff hist +2 NgsCctsBuildCompleteGenomics →1.5.0 (2013-08-29) current
- 03:5303:53, 30 August 2013 diff hist +549 NgsCctsBuildCompleteGenomics No edit summary
- 03:4703:47, 30 August 2013 diff hist +16 NgsCctsBuildCompleteGenomics →download reference genomes from CG
- 03:2203:22, 30 August 2013 diff hist +142 NgsCctsBuildCompleteGenomics →download reference genomes from CG
29 August 2013
- 20:4720:47, 29 August 2013 diff hist +23 NgsCctsBuildCompleteGenomics →download reference genomes from CG
- 20:4620:46, 29 August 2013 diff hist +47 NgsCctsBuildCompleteGenomics →1.7.1 (2013-08-29)
- 20:4520:45, 29 August 2013 diff hist +891 N NgsCctsBuildCompleteGenomics Created page with "= Binary install of Complete Genomics Analysis Tools = Source http://sourceforge.net/projects/cgatools/files/ == 1.7.1 (2013-08-29) == {{{ cd /share/apps/ngs-ccts/download..."
16 July 2013
12 June 2013
- 15:1715:17, 12 June 2013 diff hist +422 Cheaha →Hardware
16 May 2013
- 21:2821:28, 16 May 2013 diff hist −799 NgsCctsBuildVicuna →V_FAT current
- 21:2321:23, 16 May 2013 diff hist +896 NgsCctsBuildVicuna →V_FAT
- 19:0919:09, 16 May 2013 diff hist +177 NgsCctsBuildVicuna →V_FAT
- 18:5718:57, 16 May 2013 diff hist +2,075 NgsCctsBuildVicuna →V_FAT
4 April 2013
- 15:1415:14, 4 April 2013 diff hist +385 NgsCctsBuildVelvet No edit summary
28 March 2013
- 07:5307:53, 28 March 2013 diff hist +459 NgsCctsBuildVicuna →Note: pre-built exe for Linux 64bit!
- 07:3907:39, 28 March 2013 diff hist +7 NgsCctsBuildVicuna →Vicuna
- 07:3907:39, 28 March 2013 diff hist +65 m NgsCctsBuildVicuna →Note: pre-built exe for Linux 64bit!
- 07:3807:38, 28 March 2013 diff hist −24 m NgsCctsBuildVicuna →Vicuna
- 07:3807:38, 28 March 2013 diff hist −62 NgsCctsBuildVicuna →NCBI toolkit 7.0.0
- 03:5403:54, 28 March 2013 diff hist +25 m NgsCcts →in process
26 March 2013
- 15:5215:52, 26 March 2013 diff hist +121 NgsCcts →Gene Prediction
- 15:5015:50, 26 March 2013 diff hist +588 N NgsCctsGeneWise add GeneWise2.2.0 for VICUNA support current
- 15:4215:42, 26 March 2013 diff hist +147 NgsCcts →in process
- 15:2815:28, 26 March 2013 diff hist +187 NgsCctsBuildMosaik →Build MOSAIK from Source current
- 15:2415:24, 26 March 2013 diff hist +41 NgsCcts →Short Read Aligners
- 15:1415:14, 26 March 2013 diff hist +24 NgsCctsBuildMosaik →Build MOSAIK from Source
- 15:1415:14, 26 March 2013 diff hist +362 N NgsCctsBuildMosaik Created page with "= Build MOSAIK from Source = {{ cd /share/apps/ngs-ccts wget https://mosaik-aligner.googlecode.com/files/MOSAIK-2.1.73-source.tar echo "3bb0e83e64b8a102a038a263916022f231e1bb..."
- 15:0715:07, 26 March 2013 diff hist +9 m NgsCcts →Short Read Aligners
- 15:0715:07, 26 March 2013 diff hist +164 NgsCcts →Short Read Aligners
15 March 2013
- 17:4217:42, 15 March 2013 diff hist +157 NgsCcts →SNP analysis
- 17:3717:37, 15 March 2013 diff hist +4 m NgsCcts →SNP analysis
- 17:3317:33, 15 March 2013 diff hist +447 NgsCcts →Short Read (denovo) Assemblers
14 March 2013
- 18:4318:43, 14 March 2013 diff hist +356 GBS722 2013 →Denovo Protocol (2x) current
- 18:4118:41, 14 March 2013 diff hist +113 GBS722 2013 →Ref-based Protocol
- 18:3818:38, 14 March 2013 diff hist +79 GBS722 2013 →Ref-based Protocol
- 18:2718:27, 14 March 2013 diff hist +79 GBS722 2013 →Denovo Protocol (2x)
- 18:2318:23, 14 March 2013 diff hist +20 GBS722 2013 →Denovo Protocol (2x)
- 18:2118:21, 14 March 2013 diff hist +6 GBS722 2013 →Denovo Protocol (2x)
- 18:1518:15, 14 March 2013 diff hist +131 GBS722 2013 →Ref-based Protocol
- 18:1418:14, 14 March 2013 diff hist +73 GBS722 2013 →Ref-based Protocol
- 17:5617:56, 14 March 2013 diff hist −4 GBS722 2013 →Ref-based Protocol
- 17:5517:55, 14 March 2013 diff hist +51 GBS722 2013 →Ref-based Protocol
- 17:5417:54, 14 March 2013 diff hist +11 GBS722 2013 →Ref-based Protocol
- 17:5317:53, 14 March 2013 diff hist +19 GBS722 2013 →Ref-based Protocol
- 17:5217:52, 14 March 2013 diff hist +31 GBS722 2013 →Ref-based Protocol
- 17:4217:42, 14 March 2013 diff hist 0 GBS722 2013 →IGV Setup
- 17:3817:38, 14 March 2013 diff hist +2,392 N GBS722 2013 Created page with "= VACV-WR WT vs DRUG protocol in Galaxy = This is an abbreviated protocol cheat-sheet to help students through the class exercises. ==Links== UAB Galaxy - https://galaxy.ua..."
11 March 2013
- 19:0419:04, 11 March 2013 diff hist −49 Galaxy File Uploads remove chmod warning for importfs
- 18:5618:56, 11 March 2013 diff hist +82 Galaxy File Uploads add warning about permissions.
- 18:1218:12, 11 March 2013 diff hist +49 Galaxy →Galaxy@UAB
- 18:1118:11, 11 March 2013 diff hist +212 Galaxy →Installed Genome Indexes: added additional genomes hg16 hg17 mm8 mm7 mm6 mm5, mostly for liftOver support.
- 18:0518:05, 11 March 2013 diff hist +2 m Galaxy →Overview
- 18:0418:04, 11 March 2013 diff hist +78 Galaxy Importfs →Copying data to Cheaha using scp: winSCP link
- 18:0118:01, 11 March 2013 diff hist +255 Galaxy File Uploads added section headers, link to WinSCP, fixed wikipedia link for SCP
- 17:5317:53, 11 March 2013 diff hist +170 Galaxy File Uploads turn number list to table to add list of drawbacks/limits
7 March 2013
- 21:1021:10, 7 March 2013 diff hist +20 Galaxy →Available Tools
- 21:0821:08, 7 March 2013 diff hist +374 Galaxy →Organisms
- 21:0821:08, 7 March 2013 diff hist +570 Galaxy →microbes
- 20:5920:59, 7 March 2013 diff hist +4,961 Galaxy add available-genomes list from galaxy data-cache
- 20:3020:30, 7 March 2013 diff hist −4,236 Galaxy →Galaxy@UAB: add list of available genomes, update and abbreviate software list
- 19:3719:37, 7 March 2013 diff hist −2,092 UploadLargeData removed page. Left links to other related pages. It was redundent. current
- 19:2819:28, 7 March 2013 diff hist +152 Galaxy →Overview