SHRiMP: Difference between revisions

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[http://compbio.cs.toronto.edu/shrimp/ SHRiMP]is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.  
[http://compbio.cs.toronto.edu/shrimp/ SHRiMP]is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.  


Project homepage: http://compbio.cs.toronto.edu/shrimp/
'''Project website:''' http://compbio.cs.toronto.edu/shrimp/


====Load SGE module====
The following Modules files should be loaded for this package:
The following Modules files should be loaded for this package:
<pre>
<pre>
module load shrimp/shrimp-1.3
module load shrimp/shrimp-1.3
</pre>
</pre>
[[Category:Software]][[Category:Bioinformatics]]

Latest revision as of 15:39, 4 April 2012

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SHRiMPis a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.

Project website: http://compbio.cs.toronto.edu/shrimp/

Load SGE module

The following Modules files should be loaded for this package:

module load shrimp/shrimp-1.3