Research data repositories: Difference between revisions

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{{ResearchNotebook}}
==working groups==
[http://www.nidag.org/ NIDAG] NIDAG is an international working group dedicated to enhancing access to neuroimaging data in order to advance progress in neuroscience.
==visualization==
==visualization==
[https://wikis.uit.tufts.edu/confluence/display/VUEUserGuide/VUE+USER+GUIDE VUE]
[https://wikis.uit.tufts.edu/confluence/display/VUEUserGuide/VUE+USER+GUIDE VUE]


==papers and presentations==
==papers and presentations==
* Derrfuss, J. & Mar, R. A. (2009). Lost in localization: The need for a universal coordinate database. NeuroImage, 48, 1–7.
(PDF includes 4 commentaries by Hamilton, Nielsen, Van Essen, Laird, Lancaster, and Fox.) [http://www.yorku.ca/mar/derrfuss_mar_2009_ni_lost_in_localization_with_responses.pdf]


* [http://eprints.ecs.soton.ac.uk/20885/ Using the Institutional Repository to publish research data], C Gutteridge
* Using the Institutional Repository to publish research data, C Gutteridge [http://eprints.ecs.soton.ac.uk/20885/]
* [http://frontiersin.org/neuroscience/systemsneuroscience/paper/10.3389/fnsys.2010.00026/ Technical and organizational considerations for the long-term maintenance and development of the digital brain atlases and web-based databases], Kei Ito
* Technical and organizational considerations for the long-term maintenance and development of the digital brain atlases and web-based databases, Kei Ito [http://frontiersin.org/neuroscience/systemsneuroscience/paper/10.3389/fnsys.2010.00026/]
* [http://docs.lib.purdue.edu/lib_research/104 Institutional Repositories and Research Data Curation in a Distributed Environment], Michael Witt
* Institutional Repositories and Research Data Curation in a Distributed Environment, Michael Witt [http://docs.lib.purdue.edu/lib_research/104]
* [http://docs.lib.purdue.edu/lib_research/114 Constructing Data Curation Profiles], Michael Witt, Jacob R. Carlson, Melissa Cragin, and D. Scott Brandt
* Constructing Data Curation Profiles, Michael Witt, Jacob R. Carlson, Melissa Cragin, and D. Scott Brandt [http://docs.lib.purdue.edu/lib_research/114]
* [http://docs.lib.purdue.edu/lib_research/83 Introduction to Institutional Data Repositories Workshop], Michael Witt and Melissa Cragin
* Introduction to Institutional Data Repositories Workshop, Michael Witt and Melissa Cragin [http://docs.lib.purdue.edu/lib_research/83]
* [http://docs.lib.purdue.edu/lib_research/106 Strategies for institutional repository development: A case study of three evolving initiatives], Carole L. Palmer, Lauren C. Teffeau, and Mark P. Newton
* Strategies for institutional repository development: A case study of three evolving initiatives, Carole L. Palmer, Lauren C. Teffeau, and Mark P. Newton [http://docs.lib.purdue.edu/lib_research/106]
 
* An Internet Discussion about Scientific and Scholarly Journals and Their Future Edited by Ann Shumelda Okerson, Association of Research Libraries and James J. O'Donnell, University of Pennsylvania [http://www.arl.org/sc/subversive/]
* [http://www.arl.org/sc/subversive/ An Internet Discussion about Scientific and Scholarly Journals and Their Future] Edited by Ann Shumelda Okerson, Association of Research Libraries and James J. O'Donnell, University of Pennsylvania


==examples of repositories==
==lists of repositories==
* [http://oad.simmons.edu/oadwiki/Data_repositories OAD list of data repositories]
* [http://oad.simmons.edu/oadwiki/Data_repositories OAD list of data repositories]
* [http://oad.simmons.edu/oadwiki/Disciplinary_repositories OAD list of document repositories]
* [http://oad.simmons.edu/oadwiki/Disciplinary_repositories OAD list of document repositories]


Why aren't there any sites on both lists?
Why aren't there any sites on both lists?
==example neuroimaging databases==
;[http://www.xnat.org/ xnat] : software to build your own neuroimaging database and manage study workflow
;[http://sumsdb.wustl.edu:8081/sums/index.jsp SumsDB] : SumsDB is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.
;[http://www.nitrc.org/projects/fcon_1000/ 1000 Functional Connectomes Project] : Goal: To usher in a new era of discovery science for human brain function through active data-sharing by the neuroimaging community.
;[http://www.nitrc.org/projects/multimodal/ nitrc multimodal] : This is intended to be a resource for statisticians and imaging scientists to be able to quantify the reproducibility of their imaging methods using data available from a generic "1 hour" session at 3T.
;[http://www.openfmri.org/ OpenfMRI] : OpenfMRI.org is a project dedicated to the free and open sharing of functional magnetic resonance imaging (fMRI) datasets, including raw data.
;[http://www.fmridc.org/f/fmridc fmridc] : A public repository of peer reviewed fMRI studies and their underlying data
;[http://www.oasis-brains.org/ oasis] : The Open Access Series of Imaging Studies (OASIS) is a project aimed at making MRI data sets of the brain freely available to the scientific community.
==example data license==
;[http://www.nitrc.org/include/glossary.php#583 BIRN data license]

Latest revision as of 14:08, 1 November 2010

working groups

NIDAG NIDAG is an international working group dedicated to enhancing access to neuroimaging data in order to advance progress in neuroscience.

visualization

VUE

papers and presentations

  • Derrfuss, J. & Mar, R. A. (2009). Lost in localization: The need for a universal coordinate database. NeuroImage, 48, 1–7.

(PDF includes 4 commentaries by Hamilton, Nielsen, Van Essen, Laird, Lancaster, and Fox.) [1]

  • Using the Institutional Repository to publish research data, C Gutteridge [2]
  • Technical and organizational considerations for the long-term maintenance and development of the digital brain atlases and web-based databases, Kei Ito [3]
  • Institutional Repositories and Research Data Curation in a Distributed Environment, Michael Witt [4]
  • Constructing Data Curation Profiles, Michael Witt, Jacob R. Carlson, Melissa Cragin, and D. Scott Brandt [5]
  • Introduction to Institutional Data Repositories Workshop, Michael Witt and Melissa Cragin [6]
  • Strategies for institutional repository development: A case study of three evolving initiatives, Carole L. Palmer, Lauren C. Teffeau, and Mark P. Newton [7]
  • An Internet Discussion about Scientific and Scholarly Journals and Their Future Edited by Ann Shumelda Okerson, Association of Research Libraries and James J. O'Donnell, University of Pennsylvania [8]

lists of repositories

Why aren't there any sites on both lists?

example neuroimaging databases

xnat
software to build your own neuroimaging database and manage study workflow
SumsDB
SumsDB is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.
1000 Functional Connectomes Project
Goal: To usher in a new era of discovery science for human brain function through active data-sharing by the neuroimaging community.
nitrc multimodal
This is intended to be a resource for statisticians and imaging scientists to be able to quantify the reproducibility of their imaging methods using data available from a generic "1 hour" session at 3T.
OpenfMRI
OpenfMRI.org is a project dedicated to the free and open sharing of functional magnetic resonance imaging (fMRI) datasets, including raw data.
fmridc
A public repository of peer reviewed fMRI studies and their underlying data
oasis
The Open Access Series of Imaging Studies (OASIS) is a project aimed at making MRI data sets of the brain freely available to the scientific community.

example data license

BIRN data license