PublicDatasetsNgsDbNcbiTaxonomy

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Revision as of 15:48, 20 November 2012 by Curtish@uab.edu (Talk | contribs)

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download and build files with a modified galaxy script.

# populates /lustre/project/public_datasets/ngs/databases/ncbi_taxonomy
/home/curtish/galaxy/scripts/taxonomy/uab_processTaxonomy.sh

put symlinks into galaxy/git

cd /home/curtish/galaxy/scripts/taxonomy/
ln -s /lustre/project/public_datasets/ngs/databases/ncbi_taxonomy/gi_taxid_sorted.txt .
ln -s /lustre/project/public_datasets/ngs/databases/ncbi_taxonomy/nodes.dmp .
ln -s /lustre/project/public_datasets/ngs/databases/ncbi_taxonomy/names.cleaned.dmp names.dmp
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