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Revision as of 16:51, 15 October 2019 by Curtish@uab.edu (talk | contribs)
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Attention: Research Computing Documentation has Moved

Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.

As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

First time setup

  1. get a cheaha account (see Cheaha_GettingStarted)
  2. launch an interactive desktop with OOD https://rc.uab.edu
  3. start a "Terminal"
  4. in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
  5. that will install IGV locally, and launch it.

Running later

  1. Setup should create a desktop icon called "IGV-2.5.sh"
  2. In the future, you can just start OOD, then click on "IGV-2.5.sh"

Script source code

Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv