OOD IGV

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# get a cheaha account (see [[Cheaha_GettingStarted]])
 
# get a cheaha account (see [[Cheaha_GettingStarted]])
 
# launch an interactive desktop with OOD https://rc.uab.edu
 
# launch an interactive desktop with OOD https://rc.uab.edu
 +
<gallery>
 +
File:A.ood start desktop.png|OOD Start Desktop Menu
 +
File:A.ood set mem.png|OOD Set Desktop memory/run-time
 +
File:A.ood launch desktop.png|Launch Desktop once it's running
 +
</gallery>
 
# start a "Terminal"  
 
# start a "Terminal"  
 
# in terminal, enter  <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki>
 
# in terminal, enter  <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki>

Revision as of 13:27, 15 October 2019

First time setup

  1. get a cheaha account (see Cheaha_GettingStarted)
  2. launch an interactive desktop with OOD https://rc.uab.edu
  1. start a "Terminal"
  2. in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
  3. that will install IGV locally, and launch it.

Running later

  1. Setup should create a desktop icon called "IGV-2.5.sh"
  2. In the future, you can just start OOD, then click on "IGV-2.5.sh"

Script source code

Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv

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