OOD IGV: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
# get a cheaha account (see [[Cheaha_GettingStarted]]) | # get a cheaha account (see [[Cheaha_GettingStarted]]) | ||
# launch an interactive desktop with OOD https://rc.uab.edu | # launch an interactive desktop with OOD https://rc.uab.edu | ||
<gallery> | |||
File:A.ood start desktop.png|OOD Start Desktop Menu | |||
File:A.ood set mem.png|OOD Set Desktop memory/run-time | |||
File:A.ood launch desktop.png|Launch Desktop once it's running | |||
</gallery> | |||
# start a "Terminal" | # start a "Terminal" | ||
# in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | # in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | ||
Revision as of 19:27, 15 October 2019
First time setup
- get a cheaha account (see Cheaha_GettingStarted)
- launch an interactive desktop with OOD https://rc.uab.edu
- Error creating thumbnail: File missing
OOD Start Desktop Menu
- Error creating thumbnail: File missing
OOD Set Desktop memory/run-time
- Error creating thumbnail: File missing
Launch Desktop once it's running
- start a "Terminal"
- in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
- that will install IGV locally, and launch it.
Running later
- Setup should create a desktop icon called "IGV-2.5.sh"
- In the future, you can just start OOD, then click on "IGV-2.5.sh"
Script source code
Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv