OOD IGV

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# in terminal, enter  <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki>
 
# in terminal, enter  <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki>
 
# that will install IGV locally, and launch it.  
 
# that will install IGV locally, and launch it.  
# That should also create a desktop icon called "IGV-2.5.sh"
+
 
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== Running later ==
 +
# Setup should create a desktop icon called "IGV-2.5.sh"
 
# In the future, you can just start OOD, then click on "IGV-2.5.sh"
 
# In the future, you can just start OOD, then click on "IGV-2.5.sh"
 +
 +
== Script source code ==
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Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv

Revision as of 10:51, 15 October 2019

First time setup

  1. get a cheaha account (see Cheaha_GettingStarted)
  2. launch an interactive desktop with OOD https://rc.uab.edu
  3. start a "Terminal"
  4. in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
  5. that will install IGV locally, and launch it.

Running later

  1. Setup should create a desktop icon called "IGV-2.5.sh"
  2. In the future, you can just start OOD, then click on "IGV-2.5.sh"

Script source code

Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv

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