OOD IGV

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(Created page with "== First time setup == # get a cheaha account (see [Cheaha_GettingStarted]) # launch an interactive desktop with OOD https://rc.uab.edu # start a "Terminal" # in terminal,...")
 
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# get a cheaha account (see [Cheaha_GettingStarted])
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# get a cheaha account (see [[Cheaha_GettingStarted]])
 
# launch an interactive desktop with OOD https://rc.uab.edu
 
# launch an interactive desktop with OOD https://rc.uab.edu
 
# start a "Terminal"  
 
# start a "Terminal"  
# in terminal, enter  
+
# in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki>
<nowiki>/share/apps/ngs-ccts/IGV/setup/IGV.sh</nowiki>
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# that will install IGV locally, and launch it.
 
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# That should also create a desktop icon called "IGV-2.5.sh"
 
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# In the future, you can just start OOD, then click on "IGV-2.5.sh"
That should create a desktop icon called "LAUNCH_IGV.sh", and it should launch IGV as well.
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In the future, you can just start OOD, then click on "LAUNCH_IGV"
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Revision as of 10:47, 15 October 2019

First time setup

  1. get a cheaha account (see Cheaha_GettingStarted)
  2. launch an interactive desktop with OOD https://rc.uab.edu
  3. start a "Terminal"
  4. in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
  5. that will install IGV locally, and launch it.
  6. That should also create a desktop icon called "IGV-2.5.sh"
  7. In the future, you can just start OOD, then click on "IGV-2.5.sh"
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