OOD IGV: Difference between revisions
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* desktop open [[File:A.ood desktop.png|700px]] | * desktop open [[File:A.ood desktop.png|700px]] | ||
# start a "Terminal" | # start a "Terminal" | ||
* open terminal app [[File:B.ood with terminal. | * open terminal app [[File:B.ood with terminal highlight.jpg|700px]] | ||
# in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | # in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | ||
* enter path to installer [[File:C.ood terminal setup 25.png|700px]] | * enter path to installer [[File:C.ood terminal setup 25.png|700px]] | ||
Revision as of 20:11, 15 October 2019
First time setup
- get a cheaha account (see Cheaha_GettingStarted)
- launch an interactive desktop with OOD https://rc.uab.edu
* Requst an OOD Desktop
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* Set Request RAM and HOURS
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* Open the desktop, once running
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* desktop open
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- start a "Terminal"
* open terminal app 
- in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
* enter path to installer
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- that will install IGV locally, and launch it.
* installer will scroll a lot of text, some in alarming colors. * a few seconds after the text stop, the desktop icon and loading bar will appear
* installer finished, IGV loading
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Running later
- Setup should create a desktop icon called "IGV-2.5.sh"
*
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- In the future, you can just start OOD, then click on "IGV-2.5.sh"
*
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Script source code
Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv