OOD IGV: Difference between revisions
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# in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | # in terminal, enter <nowiki>/share/apps/ngs-ccts/ood-igv/2.5.sh</nowiki> | ||
# that will install IGV locally, and launch it. | # that will install IGV locally, and launch it. | ||
# | |||
== Running later == | |||
# Setup should create a desktop icon called "IGV-2.5.sh" | |||
# In the future, you can just start OOD, then click on "IGV-2.5.sh" | # In the future, you can just start OOD, then click on "IGV-2.5.sh" | ||
== Script source code == | |||
Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv | |||
Revision as of 16:51, 15 October 2019
First time setup
- get a cheaha account (see Cheaha_GettingStarted)
- launch an interactive desktop with OOD https://rc.uab.edu
- start a "Terminal"
- in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh
- that will install IGV locally, and launch it.
Running later
- Setup should create a desktop icon called "IGV-2.5.sh"
- In the future, you can just start OOD, then click on "IGV-2.5.sh"
Script source code
Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv