NgsCctsVcflib

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Contents

Overview

https://github.com/ekg/vcflib

this project does not have release or tags.

It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html

Version 20140224

To use

module load ngs-ccts/vcflib/20140224

Build details

{{{ mkdir -p /share/apps/ngs-ccts/vcflib/20140224 git clone --recursive git://github.com/ekg/vcflib.git cd vcflib

  1. get latest gcc (older, default version failed to compile in fsom/ -see

module load gcc/4.8.1

make

  1. create module file
  2. it adds $VER_DIR/vcflib/bin to PATH

mkdir /share/apps/ngs-ccts/modulefiles/vcflib vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024

}}}

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