NgsCctsVcflib: Difference between revisions

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== To use ==
== To use ==


  <nowiki>module load ngs-ccts/vcflib/20140224</nowiki>
<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>


== Build details ==
== Build details ==
{{{
 
<nowiki># setup
mkdir -p /share/apps/ngs-ccts/vcflib/20140224
mkdir -p /share/apps/ngs-ccts/vcflib/20140224
# get latest code
git clone --recursive git://github.com/ekg/vcflib.git
git clone --recursive git://github.com/ekg/vcflib.git
cd vcflib
 
# build


# get latest gcc (older, default version failed to compile in fsom/ -see
# get latest gcc (older, default version failed to compile in fsom/ -see
module load gcc/4.8.1
module load gcc/4.8.1
 
cd vcflib
make
make


Line 27: Line 31:
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
 
</nowiki>
}}}

Latest revision as of 18:56, 24 February 2014

Overview

https://github.com/ekg/vcflib

this project does not have release or tags.

It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html

Version 20140224

To use

module load ngs-ccts/vcflib/20140224

Build details

# setup
mkdir -p /share/apps/ngs-ccts/vcflib/20140224

# get latest code
git clone --recursive git://github.com/ekg/vcflib.git

# build

# get latest gcc (older, default version failed to compile in fsom/ -see
module load gcc/4.8.1
cd vcflib
make

# create module file
# it adds $VER_DIR/vcflib/bin to PATH
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024