NgsCctsVcflib

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(Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (...")
 
(Build details)
 
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= vcflib =
+
= Overview =
  
 
https://github.com/ekg/vcflib
 
https://github.com/ekg/vcflib
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It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html
 
It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html
  
== Version 20140224 ==
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= Version 20140224 =
 +
== To use ==
  
=== To use ===
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<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>
{{{
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module load ngs-ccts/vcflib/20140224
+
}}}
+
  
=== Build details ===
+
== Build details ==
  
{{{
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<nowiki># setup
 
mkdir -p /share/apps/ngs-ccts/vcflib/20140224
 
mkdir -p /share/apps/ngs-ccts/vcflib/20140224
 +
 +
# get latest code
 
git clone --recursive git://github.com/ekg/vcflib.git
 
git clone --recursive git://github.com/ekg/vcflib.git
cd vcflib
+
 
 +
# build
  
 
# get latest gcc (older, default version failed to compile in fsom/ -see
 
# get latest gcc (older, default version failed to compile in fsom/ -see
 
module load gcc/4.8.1
 
module load gcc/4.8.1
 
+
cd vcflib
 
make
 
make
  
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mkdir /share/apps/ngs-ccts/modulefiles/vcflib
 
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
 
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
 
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
 
+
</nowiki>
}}}
+

Latest revision as of 12:56, 24 February 2014

Contents

[edit] Overview

https://github.com/ekg/vcflib

this project does not have release or tags.

It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html

[edit] Version 20140224

[edit] To use

module load ngs-ccts/vcflib/20140224

[edit] Build details

# setup
mkdir -p /share/apps/ngs-ccts/vcflib/20140224

# get latest code
git clone --recursive git://github.com/ekg/vcflib.git

# build

# get latest gcc (older, default version failed to compile in fsom/ -see
module load gcc/4.8.1
cd vcflib
make

# create module file
# it adds $VER_DIR/vcflib/bin to PATH
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024

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