NgsCctsGeneWise

From Cheaha
Revision as of 15:50, 26 March 2013 by Curtish@uab.edu (talk | contribs) (add GeneWise2.2.0 for VICUNA support)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search


Attention: Research Computing Documentation has Moved
https://docs.rc.uab.edu/


Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.


As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

NgsCcts back to top

Needed for VICUNA package NgsCctsVicuna

Download and build

cd /share/apps/ngs-ccts
# get and unpack
wget -O - ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise2.2.0.tar.gz | tar xzvf -
cd wise2.2.0/src
make all
make test
cd ..
ln -s src/bin .
# more test
export WISECONFIGDIR=/share/apps/ngs-ccts/wise2.2.0/wisecfg/
bin/genewise test_data/road.pep test_data/human.genomic

Env Vars CORRECTED

You must set your WISECONFIGDIR to the config directory
before using the programs
export WISECONFIGDIR=/share/apps/ngs-ccts/wise2.2.0/wisecfg/