NgsCctsBuildVicuna

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Contents

Build/Install Broad's Vicuna

pre-requisites

NCBI toolkit 7.0.0

 # download
 cd /share/apps/ngs-ccts/downloads
 wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/7_0_0/ncbi_cxx--7_0_0.tar.gz
 # uncompress
 cd ..
 tar xzvf ../downloads/ncbi_cxx--7_0_0.tar.gz
 cd ncbi_cxx--7_0_0
 # bulid
 ./configure --prefix=/share/apps/ngs-ccts/ncbi_cxx--7_0_0 --with-optimization --with-mt --with-dll
 make

Vicuna

download

 # download - by hand - requires registration
 cd /share/apps/ngs-ccts/downloads
 firefox http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/vicuna
 mv vicuna.zip vicuna.v1.2.zip
 # uncompress
 cd ..
 unzip downloads/vicuna.v1.2.zip  -x '__MACOSX/*'
 

configure & build

 cd /share/apps/ngs-ccts/VICUNA_v1.2/src
 # patch in NCBI C++ library path
 sed -i -c -e 's|MYPATH=.*|MYPATH=/share/apps/ngs-ccts/ncbi_cxx--7_0_0|' Maketest
 
 # !! Waiting for NCBI to finish building
 make
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