https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&feed=atom&action=history
NgsCctsBuildBwa - Revision history
2024-03-29T00:36:17Z
Revision history for this page on the wiki
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https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&diff=4290&oldid=prev
Curtish@uab.edu: /* Building BWA for /share/apps/ngs-ccts */
2012-10-09T22:09:06Z
<p><span dir="auto"><span class="autocomment">Building BWA for /share/apps/ngs-ccts</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:09, 9 October 2012</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> BWA_VER=bwa-0.6.2</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> BWA_VER=bwa-0.6.2</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <del style="font-weight: bold; text-decoration: none;">bunzip2 </del>${BWA_VER}.tar.bz2</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <ins style="font-weight: bold; text-decoration: none;">tar jxvf </ins>${BWA_VER}.tar.bz2</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> tar xvf ${BWA_VER}.tar</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> rm ${BWA_VER}.tar*</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> rm ${BWA_VER}.tar*</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> cd ${BWA_VER}</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> cd ${BWA_VER}</div></td></tr>
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Curtish@uab.edu
https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&diff=4274&oldid=prev
Curtish@uab.edu: Curtish@uab.edu moved page NgsCctsBuildBwa build to NgsCctsBuildBwa
2012-10-09T20:52:27Z
<p>Curtish@uab.edu moved page <a href="/wiki/NgsCctsBuildBwa_build" class="mw-redirect" title="NgsCctsBuildBwa build">NgsCctsBuildBwa build</a> to <a href="/wiki/NgsCctsBuildBwa" title="NgsCctsBuildBwa">NgsCctsBuildBwa</a></p>
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<td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:52, 9 October 2012</td>
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Curtish@uab.edu
https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsBuildBwa&diff=4273&oldid=prev
Curtish@uab.edu: Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A..."
2012-10-09T20:47:30Z
<p>Created page with "= Building BWA for /share/apps/ngs-ccts = Downloading and building BWA BWA_VER=bwa-0.6.2 wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A..."</p>
<p><b>New page</b></p><div>= Building BWA for /share/apps/ngs-ccts =<br />
<br />
Downloading and building BWA<br />
<br />
BWA_VER=bwa-0.6.2<br />
wget http://downloads.sourceforge.net/project/bio-bwa/${BWA_VER}.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1349814953&use_mirror=iweb<br />
bunzip2 ${BWA_VER}.tar.bz2<br />
tar xvf ${BWA_VER}.tar<br />
rm ${BWA_VER}.tar*<br />
cd ${BWA_VER}<br />
make<br />
cd ..<br />
ln -s `pwd`/${BWA_VER} latest/bwa</div>
Curtish@uab.edu