NgsCctsBuildAbyss: Difference between revisions
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(Created page with " Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] Requires [sparsehash] TARGET_VER=sparsehash-2.0.2...") |
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Revision as of 21:52, 9 October 2012
Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source]
Requires [sparsehash]
TARGET_VER=sparsehash-2.0.2 wget http://sparsehash.googlecode.com/files/${TARGET_VER}.tar.gz tar xzvf ${TARGET_VER}.tar.gz rm ${TARGET_VER}.tar.gz cd ${TARGET_VER} ./configure --prefix=/share/apps/ngs-ccts/${TARGET_VER} make make install
Requires [boost]
wget http://downloads.sourceforge.net/project/boost/boost/1.49.0/boost_1_49_0.tar.bz2 tar jxf boost_1_49_0.tar.bz2 ln -s boost_1_49_0/boost boost
ABySS itself
TARGET2_VER=abyss-1.3.4 wget http://www.bcgsc.ca/downloads/abyss/${TARGET2_VER}.tar.gz tar xzvf ${TARGET2_VER}.tar.gz rm ${TARGET2_VER}.tar.gz cd ${TARGET2_VER} # CPPFLAGS is for sparsehash ./configure \ --with-boost=/usr/local/include \ --with-mpi=/usr/lib/openmpi \ CPPFLAGS=-I/share/apps/ngs-ccts/${TARGET_VAR}/include \ --enable-maxk=100