NgsCcts
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Revision as of 15:18, 9 October 2012 by Curtish@uab.edu (Talk | contribs)
Contents |
This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
See also PublicDatasetsNgs for genomes, indices and databases
Microbiome
Alignment Visualization
Short Read Aligners
- bowtie
- bowtie-0.12.7 (linked from Galaxy)
- bowtie2
- bowtie2-2.0.0-beta7 (download binary)
- bwa
- bwa-0.6.2 (download src) [NgsCctsBuildBwa]
Short Read (denovo) Assemblers
- velvet
- velvet_1.2.08 (download src)(NgsCctsBuildVelvet)
- ABySS
- abyss_1.3.4 (download src)(NgsCctsBuildAbyss)