NgsCcts
Revision as of 21:18, 9 October 2012 by Curtish@uab.edu (talk | contribs) (→Short Read (denovo) Assemblers)
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As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.
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This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
See also PublicDatasetsNgs for genomes, indices and databases
Microbiome
Alignment Visualization
Short Read Aligners
- bowtie
- bowtie-0.12.7 (linked from Galaxy)
- bowtie2
- bowtie2-2.0.0-beta7 (download binary)
- bwa
- bwa-0.6.2 (download src) [NgsCctsBuildBwa]
Short Read (denovo) Assemblers
- velvet
- velvet_1.2.08 (download src)(NgsCctsBuildVelvet)
- ABySS
- abyss_1.3.4 (download src)(NgsCctsBuildAbyss)