NgsCcts

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(Short Read (denovo) Assemblers)
(in process)
Line 35: Line 35:
 
*** maxk=100
 
*** maxk=100
 
* [http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/viral-genomics-analysis-software?package=VICUNA VICUNA] from Broad Institute - Viral genome denovo assembler '''NOT DONE'''
 
* [http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/viral-genomics-analysis-software?package=VICUNA VICUNA] from Broad Institute - Viral genome denovo assembler '''NOT DONE'''
** VICUNA_v1.2
+
** VICUNA_v1.2 [http://www.broadinstitute.org/software/viral/vicuna/vicuna.zip]
** V-FAT
+
** V-FAT [http://www.broadinstitute.org/software/viral/vfat/vfat.zip]
** V-Phaser & V-Profiler
+
** V-Phaser & V-Profiler [http://www.broadinstitute.org/software/viral/v_phaser/v_phaser.zip]

Revision as of 10:48, 31 October 2012

Contents

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

Microbiome

Alignment Visualization

Short Read Aligners

Short Read (denovo) Assemblers

in process

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