NgsCcts

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(Short Read (denovo) Assemblers)
(Short Read (denovo) Assemblers)
Line 30: Line 30:
 
*** MAXKMERLENGTH = 57
 
*** MAXKMERLENGTH = 57
 
*** LONGSEQUENCES
 
*** LONGSEQUENCES
 +
=== in process ===
 
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] '''NOT DONE'''
 
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] '''NOT DONE'''
 
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
 
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
 
*** maxk=100
 
*** maxk=100
* [http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/viral-genomics-analysis-software?package=VICUNA VICUNA] from Broad Institute - Viral genome denovo assembler
+
* [http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/viral-genomics-analysis-software?package=VICUNA VICUNA] from Broad Institute - Viral genome denovo assembler '''NOT DONE'''
 
** VICUNA_v1.2
 
** VICUNA_v1.2
 
** V-FAT
 
** V-FAT
 
** V-Phaser & V-Profiler
 
** V-Phaser & V-Profiler

Revision as of 16:53, 30 October 2012

Contents

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

Microbiome

Alignment Visualization

Short Read Aligners

Short Read (denovo) Assemblers

in process

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