NgsCcts: Difference between revisions

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* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]])
** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]])
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS]
*** MAXKMERLENGTH = 57
*** LONGSEQUENCES
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] '''NOT DONE'''
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
*** maxk=100

Revision as of 22:07, 9 October 2012

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

Microbiome

Alignment Visualization

Short Read Aligners

Short Read (denovo) Assemblers