NgsCcts

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(Short Read (denovo) Assemblers)
(Short Read (denovo) Assemblers)
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* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
 
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
 
** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]])
 
** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]])
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS]
+
*** MAXKMERLENGTH = 57
 +
*** LONGSEQUENCES
 +
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] '''NOT DONE'''
 
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
 
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]])
 +
*** maxk=100

Revision as of 16:07, 9 October 2012

Contents

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

Microbiome

Alignment Visualization

Short Read Aligners

Short Read (denovo) Assemblers

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