NgsCcts: Difference between revisions

From Cheaha
Jump to navigation Jump to search
Line 27: Line 27:
== Short Read (denovo) Assemblers ==
== Short Read (denovo) Assemblers ==
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ]
** velvet_1.2.08 (download src)([[NgsCctsBuildVelvet build]])
** velvet_1.2.08 (download src)([[NgsCctsBuildVelvet]])

Revision as of 21:15, 9 October 2012

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

Microbiome

Alignment Visualization

Short Read Aligners

Short Read (denovo) Assemblers