Modules
Line 3: | Line 3: | ||
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the ''module avail'' command for the official list of software modules installed on Cheaha. | This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the ''module avail'' command for the official list of software modules installed on Cheaha. | ||
− | Last Update: 2019- | + | Last Update: 2019-06-13 |
__NOTOC__ | __NOTOC__ | ||
<p class="toc">'''Contents:''' | [[#A|A]] | [[#B|B]] | [[#C|C]] | [[#D|D]] | [[#E|E]] | [[#F|F]] | [[#G|G]] | [[#H|H]] | [[#I|I]] | [[#J|J]] | [[#K|K]] | [[#L|L]] | [[#M|M]] | [[#N|N]] | [[#O|O]] | [[#P|P]] | [[#Q|Q]] | [[#R|R]] | [[#S|S]] | [[#T|T]] | [[#U|U]] | [[#V|V]] | [[#W|W]] | [[#X|X]] | [[#Y|Y]] | [[#Z|Z]]</p> | <p class="toc">'''Contents:''' | [[#A|A]] | [[#B|B]] | [[#C|C]] | [[#D|D]] | [[#E|E]] | [[#F|F]] | [[#G|G]] | [[#H|H]] | [[#I|I]] | [[#J|J]] | [[#K|K]] | [[#L|L]] | [[#M|M]] | [[#N|N]] | [[#O|O]] | [[#P|P]] | [[#Q|Q]] | [[#R|R]] | [[#S|S]] | [[#T|T]] | [[#U|U]] | [[#V|V]] | [[#W|W]] | [[#X|X]] | [[#Y|Y]] | [[#Z|Z]]</p> | ||
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|[[#Bismark|'''Bismark''']] | |[[#Bismark|'''Bismark''']] | ||
|0.19.0-foss-2016a | |0.19.0-foss-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#dvctools|'''dvctools''']] | |[[#dvctools|'''dvctools''']] | ||
− | | | + | |recommended |
|} | |} | ||
==E== | ==E== | ||
Line 471: | Line 467: | ||
|[[#flex|'''flex''']] | |[[#flex|'''flex''']] | ||
|2.6.3-GCCcore-7.3.0 | |2.6.3-GCCcore-7.3.0 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#freeglut|'''freeglut''']] | |[[#freeglut|'''freeglut''']] | ||
|3.0.0-intel-2017a | |3.0.0-intel-2017a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#GDAL|'''GDAL''']] | |[[#GDAL|'''GDAL''']] | ||
|2.2.3-foss-2018a-Python-3.6.4 | |2.2.3-foss-2018a-Python-3.6.4 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#GObject-Introspection|'''GObject-Introspection''']] | |[[#GObject-Introspection|'''GObject-Introspection''']] | ||
|1.48.0-foss-2016a | |1.48.0-foss-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#Gdk-Pixbuf|'''Gdk-Pixbuf''']] | |[[#Gdk-Pixbuf|'''Gdk-Pixbuf''']] | ||
|2.36.10-intel-2017a | |2.36.10-intel-2017a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#gcccuda|'''gcccuda''']] | |[[#gcccuda|'''gcccuda''']] | ||
|2018b | |2018b | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#goolf|'''goolf''']] | |[[#goolf|'''goolf''']] | ||
|1.7.20 | |1.7.20 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#IPython|'''IPython''']] | |[[#IPython|'''IPython''']] | ||
|5.0.0-foss-2016a-Python-3.5.1 | |5.0.0-foss-2016a-Python-3.5.1 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#intel|'''intel''']] | |[[#intel|'''intel''']] | ||
|mic/sdk/3.8.4 | |mic/sdk/3.8.4 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#JUnit|'''JUnit''']] | |[[#JUnit|'''JUnit''']] | ||
|4.12-Java-1.8.0_92 | |4.12-Java-1.8.0_92 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#LAPACK|'''LAPACK''']] | |[[#LAPACK|'''LAPACK''']] | ||
|3.4.2-gompi-1.5.12 | |3.4.2-gompi-1.5.12 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#LibTIFF|'''LibTIFF''']] | |[[#LibTIFF|'''LibTIFF''']] | ||
|4.0.9-GCCcore-5.4.0 | |4.0.9-GCCcore-5.4.0 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#libdrm|'''libdrm''']] | |[[#libdrm|'''libdrm''']] | ||
|2.4.91-GCCcore-5.4.0 | |2.4.91-GCCcore-5.4.0 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#libpciaccess|'''libpciaccess''']] | |[[#libpciaccess|'''libpciaccess''']] | ||
|0.13.4-intel-2016a | |0.13.4-intel-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
|[[#libpthread-stubs|'''libpthread-stubs''']] | |[[#libpthread-stubs|'''libpthread-stubs''']] | ||
|0.3-intel-2016a | |0.3-intel-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#matlab|'''matlab''']] | |[[#matlab|'''matlab''']] | ||
− | | | + | |R2019a |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#MVAPICH2|'''MVAPICH2''']] | |[[#MVAPICH2|'''MVAPICH2''']] | ||
|2.2b-GCC-4.9.3-2.25 | |2.2b-GCC-4.9.3-2.25 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#ncdu|'''ncdu''']] | |[[#ncdu|'''ncdu''']] | ||
|1.13-20.1 | |1.13-20.1 | ||
+ | |- style="vertical-align:top;" | ||
+ | |||
+ | |[[#nighres|'''nighres''']] | ||
+ | |1.1.0b1 | ||
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#ncbi-vdb|'''ncbi-vdb''']] | |[[#ncbi-vdb|'''ncbi-vdb''']] | ||
|2.7.0-foss-2016b | |2.7.0-foss-2016b | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
|[[#netCDF|'''netCDF''']] | |[[#netCDF|'''netCDF''']] | ||
|4.6.0-foss-2018a | |4.6.0-foss-2018a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#perl-app-cpanminus|'''perl-app-cpanminus''']] | |[[#perl-app-cpanminus|'''perl-app-cpanminus''']] | ||
|1.7039 | |1.7039 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
|[[#pixman|'''pixman''']] | |[[#pixman|'''pixman''']] | ||
|0.34.0-GCCcore-5.4.0 | |0.34.0-GCCcore-5.4.0 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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!Latest version | !Latest version | ||
+ | |- style="vertical-align:top;" | ||
+ | |||
+ | |[[#snakemakeslurm_local|'''snakemakeslurm_local''']] | ||
+ | |4.8.0-1 | ||
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#S.A.G.E.|'''S.A.G.E.''']] | |[[#S.A.G.E.|'''S.A.G.E.''']] | ||
|6.3 | |6.3 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#SPPARKS|'''SPPARKS''']] | |[[#SPPARKS|'''SPPARKS''']] | ||
|07192016-intel-2016a | |07192016-intel-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#SWIG|'''SWIG''']] | |[[#SWIG|'''SWIG''']] | ||
|3.0.12-foss-2018a-Python-2.7.14 | |3.0.12-foss-2018a-Python-2.7.14 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#Tar|'''Tar''']] | |[[#Tar|'''Tar''']] | ||
|1.29-goolf-1.4.10 | |1.29-goolf-1.4.10 | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#tabix|'''tabix''']] | |[[#tabix|'''tabix''']] | ||
|0.2.6-intel-2015b | |0.2.6-intel-2015b | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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!Latest version | !Latest version | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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|[[#xget|'''xget''']] | |[[#xget|'''xget''']] | ||
|xget-public | |xget-public | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
|[[#XKeyboardConfig|'''XKeyboardConfig''']] | |[[#XKeyboardConfig|'''XKeyboardConfig''']] | ||
|2.17-intel-2016a | |2.17-intel-2016a | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
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!Latest version | !Latest version | ||
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|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
|[[#zlib|'''zlib''']] | |[[#zlib|'''zlib''']] | ||
|1.2.9-intel-2017a | |1.2.9-intel-2017a | ||
+ | |- style="vertical-align:top;" | ||
+ | |||
+ | |[[#ZeroMQ|'''ZeroMQ''']] | ||
+ | |4.1.4-foss-2016a | ||
|} | |} | ||
==Software Detail== | ==Software Detail== | ||
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Command: ''module load Bismark'' | Command: ''module load Bismark'' | ||
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===Bowtie=== | ===Bowtie=== | ||
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===dvctools=== | ===dvctools=== | ||
− | Available versions: 0.3 | + | Available versions: 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.2, 1.0, latest, recommended |
Command: ''module load dvctools'' | Command: ''module load dvctools'' | ||
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Command: ''module load flex'' | Command: ''module load flex'' | ||
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===fontsproto=== | ===fontsproto=== | ||
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Command: ''module load freeglut'' | Command: ''module load freeglut'' | ||
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===FastQ_Screen=== | ===FastQ_Screen=== | ||
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Command: ''module load GDAL'' | Command: ''module load GDAL'' | ||
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===GNU=== | ===GNU=== | ||
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Command: ''module load GObject-Introspection'' | Command: ''module load GObject-Introspection'' | ||
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===GTK+=== | ===GTK+=== | ||
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Command: ''module load Gdk-Pixbuf'' | Command: ''module load Gdk-Pixbuf'' | ||
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===gawk=== | ===gawk=== | ||
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Command: ''module load gcccuda'' | Command: ''module load gcccuda'' | ||
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===glproto=== | ===glproto=== | ||
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Command: ''module load goolf'' | Command: ''module load goolf'' | ||
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===grep=== | ===grep=== | ||
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Command: ''module load IPython'' | Command: ''module load IPython'' | ||
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===icc=== | ===icc=== | ||
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Command: ''module load intel'' | Command: ''module load intel'' | ||
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===ITK=== | ===ITK=== | ||
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Command: ''module load JUnit'' | Command: ''module load JUnit'' | ||
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===Java=== | ===Java=== | ||
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Command: ''module load LAPACK'' | Command: ''module load LAPACK'' | ||
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===LeadIT=== | ===LeadIT=== | ||
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Command: ''module load LibTIFF'' | Command: ''module load LibTIFF'' | ||
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===Lmod=== | ===Lmod=== | ||
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Command: ''module load libdrm'' | Command: ''module load libdrm'' | ||
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===libfontenc=== | ===libfontenc=== | ||
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Command: ''module load libpciaccess'' | Command: ''module load libpciaccess'' | ||
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===libpthread-stubs=== | ===libpthread-stubs=== | ||
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Command: ''module load libpthread-stubs'' | Command: ''module load libpthread-stubs'' | ||
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===libsodium=== | ===libsodium=== | ||
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===matlab=== | ===matlab=== | ||
− | Available versions: R2012a, R2013a, R2015a, R2015b, R2016a, R2016b, R2017a, R2018a, R2017b | + | Available versions: R2012a, R2013a, R2015a, R2015b, R2016a, R2016b, R2017a, R2018a, R2017b, R2019a |
Command: ''module load rc/matlab'' | Command: ''module load rc/matlab'' | ||
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Command: ''module load MVAPICH2'' | Command: ''module load MVAPICH2'' | ||
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===Maq=== | ===Maq=== | ||
Line 4,457: | Line 4,191: | ||
Command: ''module load rc/ncdu'' | Command: ''module load rc/ncdu'' | ||
+ | |||
+ | ===nighres=== | ||
+ | |||
+ | Available versions: 1.1.0b1 | ||
+ | |||
+ | Command: ''module load rc/nighres'' | ||
===NASM=== | ===NASM=== | ||
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Command: ''module load ncbi-vdb'' | Command: ''module load ncbi-vdb'' | ||
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===netCDF=== | ===netCDF=== | ||
Line 4,495: | Line 4,229: | ||
Command: ''module load netCDF'' | Command: ''module load netCDF'' | ||
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===nodejs=== | ===nodejs=== | ||
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Command: ''module load perl-app-cpanminus'' | Command: ''module load perl-app-cpanminus'' | ||
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===pixman=== | ===pixman=== | ||
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Command: ''module load pixman'' | Command: ''module load pixman'' | ||
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===pkgconfig=== | ===pkgconfig=== | ||
Line 5,073: | Line 4,781: | ||
Command: ''module load Rust'' | Command: ''module load Rust'' | ||
+ | |||
+ | ===snakemakeslurm_local=== | ||
+ | |||
+ | Available versions: 4.8.0-1 | ||
+ | |||
+ | Command: ''module load snakemakeslurm_local'' | ||
===SAS=== | ===SAS=== | ||
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Command: ''module load S.A.G.E.'' | Command: ''module load S.A.G.E.'' | ||
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===SCOTCH=== | ===SCOTCH=== | ||
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Command: ''module load SPPARKS'' | Command: ''module load SPPARKS'' | ||
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===STAR-Fusion=== | ===STAR-Fusion=== | ||
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Command: ''module load SWIG'' | Command: ''module load SWIG'' | ||
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===ScientificPython=== | ===ScientificPython=== | ||
Line 5,331: | Line 5,015: | ||
Command: ''module load Tar'' | Command: ''module load Tar'' | ||
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===Tk=== | ===Tk=== | ||
Line 5,381: | Line 5,055: | ||
Command: ''module load tabix'' | Command: ''module load tabix'' | ||
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===tcsh=== | ===tcsh=== | ||
Line 5,445: | Line 5,109: | ||
Command: ''module load torque'' | Command: ''module load torque'' | ||
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===unblur=== | ===unblur=== | ||
Line 5,547: | Line 5,201: | ||
Command: ''module load rc/xget'' | Command: ''module load rc/xget'' | ||
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− | |||
===XKeyboardConfig=== | ===XKeyboardConfig=== | ||
Line 5,563: | Line 5,207: | ||
Command: ''module load XKeyboardConfig'' | Command: ''module load XKeyboardConfig'' | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
===xbitmaps=== | ===xbitmaps=== | ||
Line 5,717: | Line 5,351: | ||
Command: ''module load Yasm'' | Command: ''module load Yasm'' | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
===zlib=== | ===zlib=== | ||
Line 5,730: | Line 5,358: | ||
Description: zlib is designed to be a free, general-purpose, legally unencumbered -- that is,not covered by any patents -- lossless data-compression library for use on virtually anycomputer hardware and operating system. | Description: zlib is designed to be a free, general-purpose, legally unencumbered -- that is,not covered by any patents -- lossless data-compression library for use on virtually anycomputer hardware and operating system. | ||
− | Available versions: 1.2.11-GCCcore-6.3.0, 1.2.11-intel-2016a, 1.2.5-goolf-1.4.10, 1.2.5-goolf-1.7.20, 1.2.7-foss-2016a, 1.2.7-goolf-1.4.10, 1.2.7-goolf-1.7.20, 1.2.7-intel-2015b, 1.2.7-intel-2016a, 1.2.8, 1.2.8-GCC-4.9.3-binutils-2.25, 1.2.8-GCCcore-4.9.3, 1.2.8-GCCcore-5.4.0, 1.2.8-GNU-4.9.3-2.25, 1.2.8-foss-2015b, 1.2.8-foss-2016a, 1.2.8-foss-2016b, 1.2.8-goolf-1.4.10, 1.2.8-goolf-1.7.20, 1.2.8-intel-2015b, 1.2.8-intel-2016a, 1.2.8-GCCcore-6.1.0, 1.2.8-intel-2017a, 1.2.11, 1.2.11-GCCcore-6.4.0, 1.2.8-intel-2016b, 1.2.11-GCCcore-7.3.0, 1.2.11-GCCcore-5.4.0, 1.2.9-intel-2017a | + | Available versions: 1.2.10, 1.2.11-GCCcore-6.3.0, 1.2.11-intel-2016a, 1.2.5-goolf-1.4.10, 1.2.5-goolf-1.7.20, 1.2.7-foss-2016a, 1.2.7-goolf-1.4.10, 1.2.7-goolf-1.7.20, 1.2.7-intel-2015b, 1.2.7-intel-2016a, 1.2.8, 1.2.8-GCC-4.9.3-binutils-2.25, 1.2.8-GCCcore-4.9.3, 1.2.8-GCCcore-5.4.0, 1.2.8-GNU-4.9.3-2.25, 1.2.8-foss-2015b, 1.2.8-foss-2016a, 1.2.8-foss-2016b, 1.2.8-goolf-1.4.10, 1.2.8-goolf-1.7.20, 1.2.8-intel-2015b, 1.2.8-intel-2016a, 1.2.8-GCCcore-6.1.0, 1.2.8-intel-2017a, 1.2.11, 1.2.11-GCCcore-6.4.0, 1.2.8-intel-2016b, 1.2.11-GCCcore-7.3.0, 1.2.11-GCCcore-5.4.0, 1.2.9-intel-2017a |
Command: ''module load zlib'' | Command: ''module load zlib'' | ||
+ | |||
+ | ===ZeroMQ=== | ||
+ | |||
+ | Available versions: 3.2.5-intel-2015b, 4.1.4-foss-2016a | ||
+ | |||
+ | Command: ''module load ZeroMQ'' | ||
Latest revision as of 11:02, 13 June 2019
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.
Last Update: 2019-06-13
Contents: | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z
[edit] A
Name | Latest version |
---|---|
anvio | 3 |
atom | 1.30.0 |
AFNI | 18.2.05-intel-2016a-Python-2.7.11 |
ANTs | 2.1.0rc3-foss-2016a |
APBS | 1.4-linux-static-x86_64 |
ASHS | 2.0.0_07202018 |
ATK | 2.26.0-intel-2017a |
ATLAS | 3.10.1-gompi-1.5.12-LAPACK-3.4.2 |
Amber | 14-intel-2016a-AmberTools-15-patchlevel-13-13 |
Anaconda2 | 4.2.0 |
Aspera-Connect | 3.6.1 |
AutoDock_Vina | 1.1.2_linux_x86 |
Autoconf | 2.69-GCCcore-5.4.0 |
annovar | 2016Feb01-foss-2015b-Perl-5.22.1 |
ant | 1.9.7-Java-1.8.0_92 |
ABySS | 2.0.2-foss-2016a |
Anaconda3 | 5.3.0 |
aaf-phylogeny | 20160831 |
acml | gcc/mp/fma4/5.3.1 |
[edit] B
Name | Latest version |
---|---|
BrainSuite | 15b |
basespace-cli | 0.8.12 |
brainstorm | 180709 |
BEDTools | 2.26.0-foss-2016a |
BSMAP | 2.90-foss-2016a |
BWA | 0.7.13-intel-2016a |
BXH_XCEDE_TOOLS | 1.11.1 |
BamTools | 2.4.0-intel-2016a |
Bismark | 0.19.0-foss-2016a |
Bowtie | 1.1.2-foss-2016a |
Bowtie2 | 2.3.3-intel-2017a |
BreakDancer | 1.4.5-intel-2016a |
BCFtools | 1.6-intel-2016a |
BLAST+ | 2.6.0-intel-2017a-Python-2.7.13 |
Biopython | 1.70-intel-2017a-Python-3.6.1 |
bioitx | jupyter |
blacs | openmpi/gcc/64/1.1patch03 |
blas | gcc/64/3.8.0 |
bonnie++ | 1.97.3 |
[edit] C
Name | Latest version |
---|---|
cmg | 2016.101.GU |
cytoscape | 2.8.2 |
cellranger | 2.2.0 |
crossmap | 0.2.8 |
chezscheme | 9.5 |
ceres | 1.13.0 |
CBLAS | 20110120-foss-2016b |
CD-HIT | 4.6.8-intel-2017a |
CHARMM | 40b1-intel-2016a |
CHASE | v1 |
CUDA | 9.2.88-GCC-7.3.0-2.30 |
Circos | 0.69-5-intel-2016a-Perl-5.18.2 |
ConnectomeWorkbench | 1.3.1 |
Cufflinks | 2.2.1-goolf-1.7.20 |
cairo | 1.14.12-GCCcore-6.4.0 |
configurable-http-proxy | 1.3.0-foss-2016a-nodejs-4.4.7 |
cutadapt | 1.12 |
CTFFIND | 4.1.8-foss-2016b |
cuDNN | 7.0.5-CUDA-9.0.176 |
ctffind | 4.0.17-foss-2016b |
cluster-tools-dell | 8.1 |
cluster-tools | 8.1 |
cuda90 | toolkit/9.0.176 |
cuda91 | toolkit/9.1.85 |
cuda80 | toolkit/8.0.61 |
cuda10.0 | toolkit/10.0.130 |
cuda92 | toolkit/9.2.88 |
[edit] D
Name | Latest version |
---|---|
delly | 0.7.6 |
dsistudio | dsistudio-20151020 |
detonate | 1.11 |
dicombrowser | 1.7.0b5 |
drracket | 7.1 |
DBus | 1.11.20-intel-2017a |
DMTCP | 2.5.0 |
Doxygen | 1.8.13-GCCcore-6.4.0 |
damageproto | 1.2.1-intel-2016a |
dbus-glib | 0.108-intel-2017a |
DB | 6.2.32-intel-2017a |
dvctools | recommended |
[edit] E
Name | Latest version |
---|---|
EMAN2 | 2.2 |
EIGENSOFT | 6.1.4-foss-2016b |
ENT | 1.0.2 |
EPACTS | 3.2.6-foss-2016b |
Elk | 4.3.6-intel-2016a |
Emacs | 24.5-GCC-4.9.3-2.25 |
entrypoints | 0.2.2-foss-2016a-Python-3.5.1 |
eudev | 3.1.5-foss-2016b |
EDGE_pro | 1.3.1 |
exonerate | 2.2.0 |
EDGE_pro_patch | 1.3.1-2 |
[edit] F
Name | Latest version |
---|---|
FSL | 6.0.0 |
fdtd | 8.17.1157-1 |
freesurfer | Dev/10_29_16 |
fpart | 1.1.0 |
freeimage | 3.18 |
FASTX-Toolkit | 0.0.14-intel-2015b |
FIAT | 1.6.0-intel-2015b-Python-2.7.11 |
FLTK | 1.3.3-foss-2016b |
FLUENT | 19.1 |
FSL | 5.0.10-intel-2017a |
FastQC | 0.11.7-Java-1.8.0_74 |
FastTree | 2.1.9-goolf-1.4.10 |
FreeSurfer | 6.0.0-centos6_x86_64 |
fastPHASE | 1.4.8 |
file | 5.28-foss-2016b |
fixesproto | 5.0-foss-2016a |
flex | 2.6.3-GCCcore-7.3.0 |
fontsproto | 2.1.3-intel-2016a |
freeglut | 3.0.0-intel-2017a |
FastQ_Screen | 0.11.2 |
Firefox | 44.0.2 |
FreeXL | 1.0.2-intel-2016a |
freebayes | 1.1.0-goolf-1.7.20_39e5e4b |
frealign | 9.11-intel-2016a-avx-mp |
FriBidi | 1.0.1-foss-2016b |
freeipmi | 1.5.7 |
fftw2 | openmpi/gcc/64/float/2.1.5 |
fftw3 | openmpi/gcc/64/3.3.7 |
[edit] G
Name | Latest version |
---|---|
GEMMA | GEMMA_Rec |
gromacs-intel | 2018.1 |
GeneTorrent | GeneTorrent_4.0.0-9 |
GATK | 3.7-Java-1.8.0_92 |
GC3Pie | 2.4.2 |
GCC | 7.3.0-2.30 |
GCCcore | 7.3.0 |
GD | 2.52-intel-2016a-Perl-5.18.2 |
GDAL | 2.2.3-foss-2018a-Python-3.6.4 |
GNU | 4.9.3-2.25 |
GObject-Introspection | 1.48.0-foss-2016a |
GTK+ | 2.24.31-intel-2017a |
Gdk-Pixbuf | 2.36.10-intel-2017a |
gawk | 4.0.2-goolf-1.4.10 |
gcccuda | 2018b |
glproto | 1.4.17-foss-2016b |
gnuplot | 5.0.3-intel-2016a |
gnutls | 3.4.7-GNU-4.9.3-2.25 |
goolf | 1.7.20 |
grep | 2.15-goolf-1.4.10 |
groff | 1.22.2-foss-2016b |
gtool | 0.7.5_linux_x86_64 |
guile | 1.8.8-GNU-4.9.3-2.25 |
GEOS | 3.6.2-foss-2018a-Python-3.6.4 |
GStreamer | 1.8.3-foss-2016a |
GConf | 3.2.6-intel-2017a |
GST-plugins-base | 0.10.36-intel-2017a |
gdc-client | 1.3.0-intel-2016a-Python-2.7.12 |
Gctf | 1.06_devel |
gzip | 1.6 |
gcc | 7.2.0 |
gdb | 8.0.1 |
globalarrays | openmpi/gcc/64/5.6.1 |
[edit] H
Name | Latest version |
---|---|
hydrasv | 0.5.3 |
HOMER | 4.9 |
HAPGEN2 | 2.2.0 |
HISAT2 | 2.1.0-foss-2016b |
HPL | 2.2-intel-2016a |
HTSeq | 0.6.1p1-intel-2015b-Python-2.7.8 |
HarfBuzz | 1.5.1-intel-2017a |
Hypre | 2.10.1-intel-2015b |
h5py | 2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16 |
help2man | 1.47.4-GCCcore-5.4.0 |
hwloc | 1.11.8 |
HMMER | 3.1b2-intel-2016a |
hdf5 | 1.10.1 |
hdf5_18 | 1.8.20 |
hpl | 2.2 |
[edit] I
Name | Latest version |
---|---|
intel | compiler/64/ps_2016/2016.0.047 |
IMPUTE2 | 2.3.2_x86_64_static |
IPython | 5.0.0-foss-2016a-Python-3.5.1 |
icc | 2016.3.210-GCC-5.4.0-2.26 |
iccifort | 2016.3.210-GCC-5.4.0-2.26 |
ifort | 2016.3.210-GCC-5.4.0-2.26 |
iimpi | 2016b |
imkl | 11.3.3.210-iimpi-2016b |
impi | 5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26 |
inputproto | 2.3.1-intel-2016a |
intel | mic/sdk/3.8.4 |
ITK | 4.12.2-foss-2016b-Python-2.7.12 |
ICU | 61.1-GCCcore-6.4.0 |
ipmitool | 1.8.18 |
intel-tbb-oss | intel64/2018_20180618oss |
iozone | 3_471 |
[edit] J
Name | Latest version |
---|---|
jspr | 2017-7-20 |
JAGS | 3.4.0-goolf-1.4.10 |
JUnit | 4.12-Java-1.8.0_92 |
Java | .modulerc |
Jellyfish | 2.2.6-foss-2016b |
jupyterhub | 0.6.1-foss-2016a-Python-3.5.1 |
[edit] K
Name | Latest version |
---|---|
Kent_tools | 340 |
Kerberos_V5 | 1.12.2-intel-2015b |
kbproto | 1.0.7-intel-2016a |
KING | 2.1.2-foss-2016a |
kallisto | 0.43.1-intel-2017a |
[edit] L
Name | Latest version |
---|---|
lstc | lsdyna |
lumpy | 0.2.13 |
lcmodel | 6.3 |
luajit | 2.0.5 |
libarchive | 3.1.2-10 |
LAPACK | 3.4.2-gompi-1.5.12 |
LeadIT | 2.1.9 |
LibTIFF | 4.0.9-GCCcore-5.4.0 |
Lmod | 6.3-GCC-4.8.4 |
LocusZoom | 1.3-goolf-1.7.20 |
Lua | 5.1.4-8-GCC-4.8.4 |
lftp | 4.6.4-GNU-4.9.3-2.25 |
libGLU | 9.0.0-foss-2018a |
libICE | 1.0.9-intel-2016a |
libSM | 1.2.2-intel-2016a |
libX11 | 1.6.3-intel-2016a |
libXau | 1.0.8-intel-2016a |
libXcursor | 1.1.14-foss-2016b |
libXdamage | 1.1.4-intel-2016a |
libXdmcp | 1.1.2-intel-2016a |
libXext | 1.3.3-intel-2016a |
libXfixes | 5.0.1-intel-2016a |
libXfont | 1.5.1-intel-2016a-freetype-2.6.3 |
libXft | 2.3.2-foss-2016b |
libXi | 1.7.6-intel-2016a |
libXinerama | 1.1.3-foss-2016b |
libXmu | 1.1.2-intel-2016a |
libXp | 1.0.3-intel-2016a |
libXpm | 3.5.11-intel-2016a |
libXrandr | 1.5.0-intel-2016a |
libXrender | 0.9.9-intel-2016a |
libXt | 1.1.5-intel-2016a |
libcerf | 1.4-intel-2016a |
libdrm | 2.4.91-GCCcore-5.4.0 |
libfontenc | 1.1.3-intel-2016a |
libgcrypt | 1.6.5-intel-2017a |
libgd | 2.2.4-intel-2017a |
libglade | 2.6.4-intel-2016a |
libgpg-error | 1.21-intel-2017a |
libgtextutils | 0.6.1-intel-2015b |
libidn | 1.32-GNU-4.9.3-2.25 |
libjpeg-turbo | 1.5.3-GCCcore-5.4.0 |
libpciaccess | 0.13.4-intel-2016a |
libpthread-stubs | 0.3-intel-2016a |
libsodium | 1.0.8-foss-2016a |
libtasn1 | 4.7-GNU-4.9.3-2.25 |
libtool | 2.4.6-GCCcore-5.4.0 |
libunistring | 0.9.3-GNU-4.9.3-2.25 |
libxcb | 1.8-foss-2016a-Python-2.7.3 |
libxkbcommon | 0.6.1-intel-2016a |
libxslt | 1.1.29-intel-2017a |
libsndfile | 1.0.28-GCCcore-6.4.0 |
libyaml | 0.1.7-intel-2016a |
libspatialindex | 1.8.5-intel-2016a |
libspatialite | 4.3.0a-intel-2016a |
LoFreq | 2.1.2-intel-2017a-Python-2.7.12 |
LibUUID | 1.0.3-foss-2016a |
LAME | 3.99.5-foss-2016b |
LZO | 2.10-foss-2016b |
libgeotiff | 1.4.2-foss-2018a |
lua | 5.3.4 |
lapack | gcc/64/3.8.0 |
[edit] M
Name | Latest version |
---|---|
MEGA2 | 4.9.1 |
Mathematica | 10.3 |
manta | 1.0.3 |
mat | test |
matlab | R2019a |
metasv | 0.5.2 |
mriconvert | 2.0.8 |
maskface | 12272017 |
M4 | 1.4.18-GCCcore-5.4.0 |
MACH | 1.0.18 |
MACS | 1.4.2-1-goolf-1.7.20-Python-2.7.5 |
MOSAIK | 2.2.28-intel-2016a-20140425-24cf06 |
MPICH | 3.0.4-GCC-4.8.1 |
MRIcroGL | 09302016 |
MRIcron | 06_22_15 |
MRtrix | 0.3.16-intel-2016a-Python-2.7.11 |
MUSCLE | 3.8.31-intel-2016a |
MVAPICH2 | 2.2b-GCC-4.9.3-2.25 |
Maq | 0.7.0 |
Mathematica | 11.0.1 |
Maven | 3.3.9 |
Mercurial | 3.2.4-foss-2015b-Python-2.7.9 |
Mesa | 11.1.2-foss-2016b |
Minimac2 | 2014.9.15-intel-2015b |
Minimac3 | 1.0.10-intel-2015b |
makedepend | 1.0.5-foss-2016b |
matplotlib | 1.5.1-foss-2016a-Python-2.7.11 |
motif | 2.3.7-intel-2016a |
MACS2 | 2.1.1.20160309-foss-2016a-Python-2.7.11 |
MEME | 4.12.0-foss-2016a |
MultiQC | 0.8~ |
Mono | 5.2.0.224-intel-2017a |
MaSuRCA | 3.2.6-foss-2018a |
minimap2 | 2.0rc1-foss-2016b |
MotionCor2 | 1.0.5 |
mpich | ge/gcc/64/3.2.1 |
mpiexec | 0.84_432 |
mvapich2 | gcc/64/2.3b |
[edit] N
Name | Latest version |
---|---|
NAMD | 2.13b2-gpu |
nccl | 1.3.4-1 |
ncdu | 1.13-20.1 |
nighres | 1.1.0b1 |
NASM | 2.13.03-GCCcore-5.4.0 |
NGS | 1.2.5-foss-2016b |
ncbi-vdb | 2.7.0-foss-2016b |
netCDF | 4.6.0-foss-2018a |
nodejs | 4.4.7-foss-2016a |
numactl | 2.0.11-GCCcore-7.3.0 |
numpy | 1.10.1-goolf-1.7.20-Python-2.7.11 |
NLopt | 2.4.2-foss-2018a |
NiBabel | 2.1.0-intel-2017a-Python-2.7.13 |
ngmlr | 0.2.6-foss-2016b |
NCBI-Toolkit | 18.0.0-intel-2017a |
NCCL | 2.2.13-CUDA-8.0.61 |
netcdf | gcc/64/4.5.0 |
netperf | 2.7.0 |
[edit] O
Name | Latest version |
---|---|
openscenegraph | 3.2.1 |
OTF | 1.12.4-gompi-1.5.12 |
OpenPGM | 5.2.122-intel-2015b |
OpenSSL | 1.0.2h-foss-2016b |
OpenMM | 6.3-intel-2016a-Python-2.7.11 |
openmpi | gcc/64/1.10.7 |
openblas | dynamic/0.2.20 |
[edit] P
Name | Latest version |
---|---|
parsync | 1.69 |
PCRE | 8.41-GCCcore-5.4.0 |
PDT | 3.20-goolf-1.7.20 |
PETSc | 3.6.3-intel-2015b-Python-2.7.11 |
PGI | 18.5-GCC-6.4.0-2.28 |
PHASE | 2.1.1 |
PIL | 1.1.7-intel-2016a-Python-2.7.11 |
PROJ | 5.0.0-foss-2018a |
Pango | 1.40.12-intel-2017a |
Pindel | 0.2.5b8-foss-2016b |
ProbABEL | 0.5.0 |
PyCairo | 1.10.0-intel-2016a-Python-2.7.11 |
PyGObject | 2.28.6-intel-2016a-Python-2.7.11 |
PyGTK | 2.24.0-intel-2016a-Python-2.7.11 |
PyQt | 4.11.4-intel-2016a-Python-2.7.11 |
PyZMQ | 15.3.0-foss-2016a-Python-3.5.1-zmq4 |
Pygments | 2.0.2-intel-2015b-Python-2.7.9 |
Pysam | 0.9.1.4-foss-2016b-Python-2.7.12 |
p11-kit | 0.23.2-GNU-4.9.3-2.25 |
parallel | 20150822-GCC-4.9.2 |
path.py | 8.2.1-foss-2016a-Python-3.5.1 |
perl-app-cpanminus | 1.7039 |
pixman | 0.34.0-GCCcore-5.4.0 |
pkgconfig | 1.1.0-intel-2016a-Python-2.7.11 |
printproto | 1.0.5-intel-2016a |
prompt-toolkit | 1.0.3-foss-2016a-Python-3.5.1 |
pysqlite | 2.6.3-intel-2015b-Python-2.7.9 |
protobuf | 3.3.0-intel-2017a |
protobuf-python | 3.3.0-intel-2017a-Python-3.6.1 |
PyYAML | 3.12-intel-2016a-Python-3.5.1 |
prodigal | 2.6.2-GCC-4.9.3-binutils-2.25 |
Pillow | 4.3.0-intel-2017a-Python-2.7.13 |
p7zip | 9.38.1 |
patchelf | 0.9-foss-2016b |
PCRE2 | 10.31-foss-2018a |
[edit] Q
Name | Latest version |
---|---|
qdirstat | 1.4 |
Qt | 4.8.7-intel-2016a |
Qwt | 6.1.3-intel-2016a |
QwtPolar | 1.1.1-intel-2016a |
QUAST | 4.6.3-foss-2016a-Python-2.7.11 |
QIIME | qiime-dependencies |
QWRAP | v3 |
[edit] R
Name | Latest version |
---|---|
RStudio | 1.0.44 |
relion | 2.1 |
rserver | 3.5.2_X11 |
R | DESeq2.R-3.4.3-intel-2017a-X11-20170314 |
RAxML | 8.1.1-goolf-1.4.10-mt-avx |
RSeQC | 2.6.3-goolf-1.7.20-Python-2.7.10-R-3.2.1 |
Ruby | 2.3.3 |
randrproto | 1.5.0-intel-2016a |
renderproto | 0.11-intel-2016a |
requests | 2.7.0-intel-2015b-Python-2.7.9 |
ResMap | 1.1.4 |
RELION | 2.1-intel-2016a-CUDA-8.0.44 |
Rust | 1.30.1-foss-2016b |
[edit] S
Name | Latest version |
---|---|
snakemakeslurm_local | 4.8.0-1 |
SAS | v9.4 |
Salmon | 0.7.2 |
soapsv | 1.3 |
snakemake | 4.8.0 |
sublime_text | 3 |
S.A.G.E. | 6.3 |
SCOTCH | 6.0.4-intel-2015b |
SHRiMP | 2.2.3-goolf-1.4.10 |
SIP | 4.18-intel-2016a-Python-2.7.11 |
SOLAR-Eclipse | 8.1.1 |
SPAdes | 3.12.0-foss-2016b |
SPPARKS | 07192016-intel-2016a |
STAR-Fusion | 0.8.0-goolf-1.4.10-Perl-5.16.3 |
STAR | 2.5.2b~ |
SWIG | 3.0.12-foss-2018a-Python-2.7.14 |
ScientificPython | 2.9.4-intel-2015b-Python-2.7.11 |
Spack | 0.10.0 |
scipy | 0.17.0-intel-2016a-Python-2.7.11 |
shapeit | 2.r837.GLIBCv2.12_linux_x86_64 |
sympy | 0.7.6.1-intel-2015b-Python-2.7.11 |
SRA-Toolkit | 2.8.2-1-centos_linux64 |
sparsehash | 2.0.2-foss-2016a |
Spark | 2.2.0-Hadoop-2.6-Java-1.8.0_144 |
summovie | 1.0.2 |
snakemakeslurm | 4.8.0-1 |
scalapack | openmpi/gcc/64/2.0.2 |
sge | 2011.11p1 |
slurm | 17.11.8 |
[edit] T
Name | Latest version |
---|---|
tortoise | 3.1.2 |
transdecoder | 5.3.0 |
torch | 7 |
tarquin | 4.3.10 |
tcllib | 1.19 |
Tar | 1.29-goolf-1.4.10 |
Tk | 8.6.8-foss-2018a |
TopHat | 2.1.1-foss-2016a |
Trim_Galore | 0.4.4-foss-2016b |
Trimmomatic | 0.36-Java-1.8.0_92 |
Trinity | 2.2.0-foss-2016a |
tabix | 0.2.6-intel-2015b |
tcsh | 6.19.00-intel-2016a |
testpath | 0.3-foss-2016a-Python-3.5.1 |
texinfo | 6.4-GCCcore-5.4.0 |
Tensorflow | 1.2.0-intel-2017a-Python-3.6.1 |
TransDecoder | 5.1.0-intel-2017a-Perl-5.24.1 |
trim_galore | 0.4.2~ |
torque | 6.1.1 |
[edit] U
Name | Latest version |
---|---|
unblur | 1.0.2 |
usearch | 7.0.1090 |
[edit] V
Name | Latest version |
---|---|
vmd | 1.9.3 |
VEGAS | 0.8.27 |
VICUNA | 1.3 |
VPhaser-2 | 02112013-intel-2016a |
VTK | 6.3.0-foss-2016b-Python-2.7.12 |
VCFtools | 0.1.15-intel-2016a-Perl-5.22.1 |
[edit] W
Name | Latest version |
---|---|
wcwidth | 0.1.7-foss-2016a-Python-3.5.1 |
wxPython | 3.0.2.0-intel-2017a-Python-2.7.13 |
wxWidgets | 3.0.3-foss-2016b |
[edit] X
Name | Latest version |
---|---|
xget | xget-public |
XKeyboardConfig | 2.17-intel-2016a |
xbitmaps | 1.1.1-intel-2016a |
xcb-proto | 1.7-foss-2016a-Python-2.7.3 |
xcb-util-image | 0.4.0-intel-2016a |
xcb-util-keysyms | 0.4.0-intel-2016a |
xcb-util-renderutil | 0.3.9-intel-2016a |
xcb-util-wm | 0.4.1-intel-2016a |
xcb-util | 0.4.0-intel-2016a |
xextproto | 7.3.0-intel-2016a |
xf86vidmodeproto | 2.3.1-intel-2016a |
xineramaproto | 1.2.1-foss-2016b |
xorg-macros | 1.19.0-intel-2016a |
xprop | 1.2.2-foss-2016b |
xproto | 7.0.28-intel-2016a |
xtrans | 1.3.5-intel-2016a |
Xerces-C++ | 3.1.2-intel-2015b |
XQilla | 2.3.2-intel-2015b |
x264 | 20160614-foss-2016b |
x265 | 2.4-foss-2016b |
[edit] Y
Name | Latest version |
---|---|
Yasm | 1.3.0-foss-2016b |
[edit] Z
Name | Latest version |
---|---|
zlib | 1.2.9-intel-2017a |
ZeroMQ | 4.1.4-foss-2016a |
[edit] Software Detail
[edit] anvio
Available versions: 3
Command: module load rc/anvio
[edit] atom
Available versions: 1.30.0
Command: module load rc/atom
[edit] AFNI
Homepage: http://afni.nimh.nih.gov/
Description: AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data -a technique for mapping human brain activity.
Available versions: 17.1.08-intel-2016a-Python-2.7.11, dev-intel-2016a-Python-2.7.11, linux_openmp_64-goolf-1.7.20-20160616, 18.2.05-intel-2016a-Python-2.7.11
Command: module load AFNI
[edit] ANTs
Available versions: 2.1.0rc3-foss-2016a
Command: module load ANTs
[edit] APBS
Available versions: 1.4-linux-static-x86_64
Command: module load APBS
[edit] ASHS
Homepage: https://sites.google.com/site/hipposubfields/home
Description: Automatic Segmentation of Hippocampal Subfields (ASHS)
Available versions: rev103_20140612, 2.0.0_07202018
Command: module load ASHS
[edit] ATK
Homepage: https://developer.gnome.org/ATK/stable/
Description: ATK provides the set of accessibility interfaces that are implemented by othertoolkits and applications. Using the ATK interfaces, accessibility tools havefull access to view and control running applications.
Available versions: 2.18.0-intel-2016a, 2.26.0-intel-2017a
Command: module load ATK
[edit] ATLAS
Available versions: 3.10.1-gompi-1.5.12-LAPACK-3.4.2
Command: module load ATLAS
[edit] Amber
Available versions: 14-intel-2016a-AmberTools-15-patchlevel-13-13
Command: module load Amber
[edit] Anaconda2
Homepage: https://www.continuum.io/anaconda-overview}
Available versions: 4.0.0, 4.2.0
Command: module load Anaconda2
[edit] Aspera-Connect
Available versions: 3.6.1
Command: module load Aspera-Connect
[edit] AutoDock_Vina
Available versions: 1.1.2_linux_x86
Command: module load AutoDock_Vina
[edit] Autoconf
Homepage: http://www.gnu.org/software/autoconf/
Description: Autoconf is an extensible package of M4 macros that produce shell scriptsto automatically configure software source code packages. These scripts can adapt thepackages to many kinds of UNIX-like systems without manual user intervention. Autoconfcreates a configuration script for a package from a template file that lists theoperating system features that the package can use, in the form of M4 macro calls.
Available versions: 2.69, 2.69-GCC-4.8.4, 2.69-GCC-4.9.3-2.25, 2.69-GNU-4.9.3-2.25, 2.69-foss-2016a, 2.69-foss-2016b, 2.69-goolf-1.7.20, 2.69-intel-2015b, 2.69-intel-2016a, 2.69-GCCcore-6.3.0, 2.69-GCC-5.4.0-2.26, 2.69-intel-2017a, 2.69-GCCcore-6.4.0, 2.69-GCCcore-7.3.0, 2.69-GCCcore-5.4.0
Command: module load Autoconf
[edit] annovar
Available versions: 2016Feb01-foss-2015b-Perl-5.22.1
Command: module load annovar
[edit] ant
Available versions: 1.9.6-Java-1.7.0_80, 1.9.7-Java-1.8.0_92
Command: module load ant
[edit] ABySS
Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss
Description: Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
Available versions: 1.9.0-foss-2016a, 2.0.2-foss-2016a
Command: module load ABySS
[edit] Anaconda3
Homepage: https://www.continuum.io/anaconda-overview
Description: Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platformthat empowers companies to adopt a modern open data science analytics architecture.
Available versions: 4.4.0, 5.0.1, 5.2.0, 5.1.0, 5.3.0
Command: module load Anaconda3
[edit] aaf-phylogeny
Available versions: 20160831
Command: module load aaf-phylogeny
[edit] acml
Available versions: gcc-int64/64/5.3.1, gcc-int64/fma4/5.3.1, gcc-int64/mp/64/5.3.1, gcc-int64/mp/fma4/5.3.1, gcc/64/5.3.1, gcc/fma4/5.3.1, gcc/mp/64/5.3.1, gcc/mp/fma4/5.3.1
Command: module load acml
[edit] BrainSuite
Available versions: 15b
Command: module load rc/BrainSuite
[edit] basespace-cli
Available versions: 0.8.12
Command: module load rc/basespace-cli
[edit] brainstorm
Available versions: 180709
Command: module load rc/brainstorm
[edit] BEDTools
Available versions: 2.26.0-foss-2016a
Command: module load BEDTools
[edit] BSMAP
Available versions: 2.90-foss-2016a
Command: module load BSMAP
[edit] BWA
Available versions: 0.7.13-intel-2015b, 0.7.13-intel-2016a
Command: module load BWA
[edit] BXH_XCEDE_TOOLS
Available versions: 1.11.1
Command: module load BXH_XCEDE_TOOLS
[edit] BamTools
Available versions: 2.4.0-goolf-1.7.20, 2.4.0-intel-2016a
Command: module load BamTools
[edit] Bismark
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/bismark/
Description: A tool to map bisulfite converted sequence reads anddetermine cytosine methylation states
Available versions: 0.10.1-goolf-1.4.10, 0.18.0-foss-2016a, 0.18.0-goolf-1.4.10, 0.19.0-foss-2016a
Command: module load Bismark
[edit] Bowtie
Homepage: http://bowtie-bio.sourceforge.net/index.shtml}
Available versions: 1.1.1-goolf-1.4.10, 1.1.2-foss-2016a
Command: module load Bowtie
[edit] Bowtie2
Homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Description: Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing readsto long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000sof characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome,its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
Available versions: 2.0.2-foss-2016a, 2.0.2-goolf-1.4.10, 2.2.5-goolf-1.7.20, 2.2.6-intel-2015b, 2.2.8-foss-2016a, 2.3.3-intel-2017a
Command: module load Bowtie2
[edit] BreakDancer
Available versions: 1.4.5-intel-2016a
Command: module load BreakDancer
[edit] BCFtools
Homepage: http://www.htslib.org/
Description: Samtools is a suite of programs for interacting with high-throughput sequencing data.BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequencevariants
Available versions: 1.3.1-goolf-1.7.20, 1.6-intel-2016a
Command: module load BCFtools
[edit] BLAST+
Homepage: http://blast.ncbi.nlm.nih.gov/
Description: Basic Local Alignment Search Tool, or BLAST, is an algorithmfor comparing primary biological sequence information, such as the amino-acidsequences of different proteins or the nucleotides of DNA sequences.
Available versions: 2.6.0-intel-2017a-Python-2.7.13
Command: module load BLAST+
[edit] Biopython
Homepage: http://www.biopython.org
Description: Biopython is a set of freely available tools for biological computation writtenin Python by an international team of developers. It is a distributed collaborative effort todevelop Python libraries and applications which address the needs of current and future work inbioinformatics.
Available versions: 1.70-intel-2017a-Python-3.6.1
Command: module load Biopython
[edit] bioitx
Available versions: jupyter-0.7, jupyter-0.8, jupyter-1.0, jupyter
Command: module load bioitx
[edit] blacs
Available versions: openmpi/gcc/64/1.1patch03
Command: module load blacs
[edit] blas
Available versions: gcc/64/3.8.0
Command: module load blas
[edit] bonnie++
Available versions: 1.97.3
Command: module load bonnie++
[edit] cmg
Available versions: 2012.116.G, 2016.101.GU
Command: module load rc/cmg
[edit] cytoscape
Available versions: 2.8.2
Command: module load rc/cytoscape
[edit] cellranger
Available versions: 2.1.1, 2.2.0
Command: module load rc/cellranger
[edit] crossmap
Available versions: 0.2.8
Command: module load rc/crossmap
[edit] chezscheme
Available versions: 9.5
Command: module load rc/chezscheme
[edit] ceres
Available versions: 1.14.0, 1.13.0
Command: module load rc/ceres
[edit] CBLAS
Available versions: 20110120-foss-2016b
Command: module load CBLAS
[edit] CD-HIT
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
Description: CD-HIT is a very widely used program for clustering andcomparing protein or nucleotide sequences.
Available versions: 4.6.4-foss-2015b-2015-0603, 4.6.6-foss-2016b, 4.6.8-intel-2017a
Command: module load CD-HIT
[edit] CHARMM
Available versions: 40b1-intel-2016a
Command: module load CHARMM
[edit] CHASE
Available versions: v1
Command: module load CHASE
[edit] CUDA
Homepage: https://developer.nvidia.com/cuda-toolkit
Description: CUDA (formerly Compute Unified Device Architecture) is a parallelcomputing platform and programming model created by NVIDIA and implemented by thegraphics processing units (GPUs) that they produce. CUDA gives developers accessto the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
Available versions: 7.5.18, 8.0.61_375.26-GCC-5.4.0-2.26, 8.0.61, 8.0.44, 9.2.148.1, 9.0.176, 9.2.88-GCC-7.3.0-2.30
Command: module load CUDA
[edit] Circos
Available versions: 0.69-5-intel-2016a-Perl-5.18.2
Command: module load Circos
[edit] ConnectomeWorkbench
Homepage: http://www.humanconnectome.org/software/connectome-workbench.html
Description: Connectome Workbench is an open-sourcevisualization and discovery tool used to explore data generatedby the Human Connectome Project. The distribution includes wb_view,a GUI-based visualization platform, and wb_command, a command-lineprogram for performing a variety of algorithmic tasks using volume,surface, and grayordinate data.
Available versions: 1.2.2, 1.3.1
Command: module load ConnectomeWorkbench
[edit] Cufflinks
Available versions: 2.2.1-foss-2016a, 2.2.1-goolf-1.7.20
Command: module load Cufflinks
[edit] cairo
Homepage: http://cairographics.org
Description: Cairo is a 2D graphics library with support for multiple output devices.Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers,PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
Available versions: 1.14.6-intel-2015b, 1.14.6-intel-2016a, 1.14.6-intel-2016a-GLib-2.48.0, 1.14.8-intel-2017a, 1.14.10-GCCcore-6.3.0, 1.14.6-foss-2016b, 1.14.6-foss-2016b-GLib-2.48.0, 1.14.6-foss-2016a-GLib-2.48.0, 1.14.12-GCCcore-6.4.0
Command: module load cairo
[edit] configurable-http-proxy
Available versions: 1.3.0-foss-2016a-nodejs-4.4.7
Command: module load configurable-http-proxy
[edit] cutadapt
Available versions: 1.14-foss-2016b-Python-2.7.12, 1.9.1-foss-2016b-Python-2.7.12, 1.12
Command: module load cutadapt
[edit] CTFFIND
Homepage: http://grigoriefflab.janelia.org/ctf
Description: CTFFIND4 is a program for finding CTFs of electron micrographs.
Available versions: 4.1.8-intel-2016a, 4.1.8-foss-2016b
Command: module load CTFFIND
[edit] cuDNN
Homepage: https://developer.nvidia.com/cudnn
Description: The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives fordeep neural networks.
Available versions: 6.0-CUDA-8.0.61, 5.1-CUDA-8.0.61, 7.0.5-CUDA-9.0.176
Command: module load cuDNN
[edit] ctffind
Homepage: http://grigoriefflab.janelia.org/ctffind4
Description: program for finding CTFs of electron micrographs
Available versions: 4.0.17-foss-2016b
Command: module load ctffind
[edit] cluster-tools-dell
Available versions: 8.1
Command: module load cluster-tools-dell
[edit] cluster-tools
Available versions: 8.1
Command: module load cluster-tools
[edit] cuda90
Available versions: blas/9.0.176, fft/9.0.176, nsight/9.0.176, profiler/9.0.176, toolkit/9.0.176
Command: module load cuda90
[edit] cuda91
Available versions: blas/9.1.85, fft/9.1.85, nsight/9.1.85, profiler/9.1.85, toolkit/9.1.85
Command: module load cuda91
[edit] cuda80
Available versions: blas/8.0.61, fft/8.0.61, nsight/8.0.61, profiler/8.0.61, toolkit/8.0.61
Command: module load cuda80
[edit] cuda10.0
Available versions: blas/10.0.130, fft/10.0.130, nsight/10.0.130, profiler/10.0.130, toolkit/10.0.130
Command: module load cuda10.0
[edit] cuda92
Available versions: blas/9.2.88, fft/9.2.88, nsight/9.2.88, profiler/9.2.88, toolkit/9.2.88
Command: module load cuda92
[edit] delly
Available versions: 0.7.6
Command: module load rc/delly
[edit] dsistudio
Available versions: dsistudio-20151020
Command: module load rc/dsistudio
[edit] detonate
Available versions: 1.11
Command: module load rc/detonate
[edit] dicombrowser
Available versions: 1.7.0b5
Command: module load rc/dicombrowser
[edit] drracket
Available versions: 7.1
Command: module load rc/drracket
[edit] DBus
Homepage: http://dbus.freedesktop.org/doc/dbus-glib
Description: D-Bus is a message bus system, a simple way for applications to talkto one another. In addition to interprocess communication, D-Bus helpscoordinate process lifecycle; it makes it simple and reliable to codea "single instance" application or daemon, and to launch applicationsand daemons on demand when their services are needed.
Available versions: 1.10.8-intel-2016a, 1.11.20-intel-2017a
Command: module load DBus
[edit] DMTCP
Available versions: 2.4.5, 2.5.0
Command: module load DMTCP
[edit] Doxygen
Homepage: http://www.doxygen.org
Description: Doxygen is a documentation system for C++, C, Java, Objective-C, Python,IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to someextent D.
Available versions: 1.8.11-foss-2016a, 1.8.11-foss-2016b, 1.8.11-intel-2015b, 1.8.11-intel-2016a, 1.8.13-GCCcore-6.3.0, 1.8.13-GCCcore-6.4.0
Command: module load Doxygen
[edit] damageproto
Available versions: 1.2.1-foss-2016b, 1.2.1-goolf-1.7.20, 1.2.1-intel-2016a
Command: module load damageproto
[edit] dbus-glib
Homepage: http://dbus.freedesktop.org/doc/dbus-glib
Description: D-Bus is a message bus system, a simple way for applications to talk to one another.
Available versions: 0.106-intel-2016a, 0.108-intel-2017a
Command: module load dbus-glib
[edit] DB
Homepage: http://www.oracle.com/technetwork/products/berkeleydb
Description: Berkeley DB enables the development of custom data management solutions,without the overhead traditionally associated with such custom projects.
Available versions: 6.0.30-foss-2016a, 6.2.32-intel-2017a
Command: module load DB
[edit] dvctools
Available versions: 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.2, 1.0, latest, recommended
Command: module load dvctools
[edit] EMAN2
Available versions: 2.2
Command: module load rc/EMAN2
[edit] EIGENSOFT
Homepage: http://www.hsph.harvard.edu/alkes-price/software/
Description: The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al.2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principalcomponents analysis to explicitly model ancestry differences between cases and controls along continuous axes ofvariation; the resulting correction is specific to a candidate marker’s variation in frequency across ancestralpopulations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFTpackage has a built-in plotting script and supports multiple file formats and quantitative phenotypes.
Available versions: 6.1.1-goolf-1.7.20, 6.1.4-foss-2016b
Command: module load EIGENSOFT
[edit] ENT
Available versions: 1.0.2
Command: module load ENT
[edit] EPACTS
Available versions: 3.2.6-foss-2016b
Command: module load EPACTS
[edit] Elk
Homepage: http://elk.sourceforge.net/}
Available versions: 4.0.15-intel-2016a, 4.3.6-intel-2016a
Command: module load Elk
[edit] Emacs
Available versions: 24.5-GCC-4.9.3-2.25
Command: module load Emacs
[edit] entrypoints
Available versions: 0.2.2-foss-2016a-Python-3.5.1
Command: module load entrypoints
[edit] eudev
Homepage: https://wiki.gentoo.org/wiki/Project:Eudev
Description: eudev is a fork of systemd-udev with the goal of obtainingbetter compatibility with existing software such asOpenRC and Upstart, older kernels, various toolchainsand anything else required by users and various distributions.
Available versions: 3.1.5-goolf-1.7.20, 3.1.5-intel-2016a, 3.1.5-foss-2016b
Command: module load eudev
[edit] EDGE_pro
Homepage: http://ccb.jhu.edu/software/EDGE-pro/
Description: EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes)is an efficient software system to estimate gene expression levels inprokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignmentand then estimates expression directly from the alignment results.
Available versions: 1.3.1
Command: module load EDGE_pro
[edit] exonerate
Available versions: 2.2.0
Command: module load exonerate
[edit] EDGE_pro_patch
Homepage: http://ccb.jhu.edu/software/EDGE-pro/
Description: EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes)is an efficient software system to estimate gene expression levels inprokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignmentand then estimates expression directly from the alignment results.
Available versions: 1.3.1-2
Command: module load EDGE_pro_patch
[edit] FSL
Homepage: http://www.fmrib.ox.ac.uk/fsl/
Description: FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Available versions: 5.0.9-Modified-fsl_sub, 6.0.0
Command: module load rc/FSL
[edit] fdtd
Available versions: 8.17.1157-1
Command: module load rc/fdtd
[edit] freesurfer
Available versions: freesurfer-5.3.0, freesurfer-5.3.0-HCP, Dev/10_29_16
Command: module load rc/freesurfer
[edit] fpart
Available versions: 1.1.0
Command: module load rc/fpart
[edit] freeimage
Available versions: 3.18
Command: module load rc/freeimage
[edit] FASTX-Toolkit
Available versions: 0.0.14-intel-2015b
Command: module load FASTX-Toolkit
[edit] FIAT
Available versions: 1.6.0-intel-2015b-Python-2.7.11
Command: module load FIAT
[edit] FLTK
Homepage: http://www.fltk.org
Description: FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows,and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGLand its built-in GLUT emulation.
Available versions: 1.3.3-intel-2016a, 1.3.3-foss-2016b
Command: module load FLTK
[edit] FLUENT
Description: ANSYS FLUENT software contains the broad physical modeling capabilities neededto model flow, turbulence, heat transfer, and reactions for industrial applications ranging fromair flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms,from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.
Available versions: 18.0, 19.1
Command: module load FLUENT
[edit] FSL
Homepage: http://www.fmrib.ox.ac.uk/fsl/
Description: FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Available versions: 5.0.9-centos6_64, 6.0.0-intel-2017a, 5.0.10-intel-2017a
Command: module load FSL
[edit] FastQC
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Description: FastQC is a quality control application for high throughput sequence data.It reads in sequence data in a variety of formats and can either provide an interactiveapplication to review the results of several different QC checks, or create an HTML basedreport which can be integrated into a pipeline.
Available versions: 0.11.5-Java-1.7.0_80, 0.11.5-Java-1.8.0_74, 0.11.7-Java-1.8.0_74
Command: module load FastQC
[edit] FastTree
Available versions: 2.1.7-goolf-1.4.10, 2.1.9-goolf-1.4.10
Command: module load FastTree
[edit] FreeSurfer
Available versions: 5.3.0-centos6_x86_64, 6.0.0-centos6_x86_64
Command: module load FreeSurfer
[edit] fastPHASE
Available versions: 1.4.8
Command: module load fastPHASE
[edit] file
Available versions: 5.28-foss-2016b
Command: module load file
[edit] fixesproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: X.org FixesProto protocol headers.
Available versions: 5.0-foss-2016b, 5.0-goolf-1.7.20, 5.0-intel-2015b, 5.0-intel-2016a, 5.0-foss-2016a
Command: module load fixesproto
[edit] flex
Homepage: http://flex.sourceforge.net/
Description: Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
Available versions: 2.5.35-foss-2016a, 2.5.39, 2.5.39-GCC-4.9.3-binutils-2.25, 2.5.39-GCCcore-4.9.3, 2.5.39-intel-2015b, 2.6.0, 2.6.0-GCCcore-5.4.0, 2.6.0-foss-2016a, 2.6.0-foss-2016b, 2.6.0-goolf-1.7.20, 2.6.0-intel-2015b, 2.6.0-intel-2016a, 2.6.3-GCCcore-6.3.0, 2.6.0-GCCcore-6.1.0, 2.6.4-GCCcore-6.3.0, 2.6.3, 2.6.4-GCCcore-6.4.0, 2.5.39-intel-2016a, 2.6.0-intel-2017a, 2.6.4, 2.6.4-GCCcore-7.3.0, 2.6.3-GCCcore-5.4.0, 2.6.4-GCCcore-5.4.0, 2.6.3-GCCcore-7.3.0
Command: module load flex
[edit] fontsproto
Available versions: 2.1.3-foss-2016b, 2.1.3-goolf-1.7.20, 2.1.3-intel-2016a
Command: module load fontsproto
[edit] freeglut
Homepage: http://freeglut.sourceforge.net/
Description: freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
Available versions: 3.0.0-foss-2016b, 3.0.0-intel-2016a, 3.0.0-intel-2017a
Command: module load freeglut
[edit] FastQ_Screen
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
Description: FastQ Screen allows you to set up a standard set of librariesagainst which all of your sequences can be searched. Your search libraries mightcontain the genomes of all of the organisms you work on, along with PhiX,Vectors or other contaminants commonly seen in sequencing experiments.
Available versions: 0.11.2
Command: module load FastQ_Screen
[edit] Firefox
Homepage: https://www.mozilla.org/en-US/firefox/new/
Description: Firefox is a free, open source Web browser for Windows, Linux and Mac OS X. It is based on theMozilla code base and offers customization options and features such as its capability to block pop-up windows,tabbed browsing, privacy and security measures, smart searching, and RSS live bookmarks.
Available versions: 44.0.2
Command: module load Firefox
[edit] FreeXL
Homepage: https://www.gaia-gis.it/fossil/freexl/index
Description: FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.
Available versions: 1.0.2-foss-2016b, 1.0.2-intel-2016a
Command: module load FreeXL
[edit] freebayes
Homepage: https://github.com/ekg/freebayes
Description: Bayesian haplotype-based polymorphism discovery and genotyping.
Available versions: 1.1.0-goolf-1.7.20_39e5e4b
Command: module load freebayes
[edit] frealign
Homepage: http://grigoriefflab.janelia.org/frealign
Description: Frealign is a program for high-resolution refinement of 3D reconstructions from cryo-EM images ofsingle particles.
Available versions: 9.11-intel-2016a-avx-mp
Command: module load frealign
[edit] FriBidi
Homepage: https://directory.fsf.org/wiki/Fribidi
Description: FriBidi is a free implementation of the Unicode Bidirectional (BiDi) Algorithm. It also providesutility functions to aid in the development of interactive editors and widgets that implement BiDi functionality.The BiDi algorithm is a prerequisite for supporting right-to-left scripts such as Hebrew, Arabic, Syriac, andThaana.
Available versions: 1.0.1-foss-2016b
Command: module load FriBidi
[edit] freeipmi
Available versions: 1.5.7
Command: module load freeipmi
[edit] fftw2
Available versions: openmpi/gcc/64/double/2.1.5, openmpi/gcc/64/float/2.1.5
Command: module load fftw2
[edit] fftw3
Available versions: openmpi/gcc/64/3.3.7
Command: module load fftw3
[edit] GEMMA
Available versions: GEMMA_Rec
Command: module load rc/GEMMA
[edit] gromacs-intel
Available versions: 5.1.1, 2018.1
Command: module load rc/gromacs-intel
[edit] GeneTorrent
Available versions: GeneTorrent_4.0.0-9
Command: module load rc/GeneTorrent
[edit] GATK
Available versions: 3.7-Java-1.8.0_112, 3.7-Java-1.8.0_92
Command: module load GATK
[edit] GC3Pie
Available versions: 2.4.2
Command: module load GC3Pie
[edit] GCC
Homepage: http://gcc.gnu.org/
Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,as well as libraries for these languages (libstdc++, libgcj,...).
Available versions: 4.7.2, 4.8.1, 4.8.2, 4.8.4, 4.9.2, 4.9.3, 4.9.3-2.25, 4.9.3-binutils-2.25, 5.4.0-2.26, system, 6.1.0-2.27, 6.3.0-2.27, 6.4.0-2.28, 4.4.7, 7.3.0-2.30
Command: module load GCC
[edit] GCCcore
Homepage: http://gcc.gnu.org/
Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,as well as libraries for these languages (libstdc++, libgcj,...).
Available versions: 4.9.3, 5.4.0, 6.3.0, 6.1.0, 6.4.0, 7.3.0
Command: module load GCCcore
[edit] GD
Available versions: 2.52-intel-2016a-Perl-5.18.2
Command: module load GD
[edit] GDAL
Homepage: http://www.gdal.org/
Description: GDAL is a translator library for raster geospatial data formats that is released under an X/MIT styleOpen Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data modelto the calling application for all supported formats. It also comes with a variety of useful commandline utilities fordata translation and processing.
Available versions: 2.0.2-intel-2016a, 2.1.0-foss-2016a, 2.1.0-foss-2016b, 2.1.0-intel-2015b, 2.1.0-intel-2016a, 2.1.3-intel-2017a-Python-2.7.13, 2.1.3-foss-2016b-Python-2.7.12, 2.1.3-intel-2016a-Python-2.7.12, 2.2.3-foss-2018a-Python-3.6.4
Command: module load GDAL
[edit] GNU
Available versions: 4.9.3-2.25
Command: module load GNU
[edit] GObject-Introspection
Homepage: https://wiki.gnome.org/GObjectIntrospection/
Description: GObject introspection is a middleware layer between C libraries(using GObject) and language bindings. The C library can be scanned atcompile time and generate a metadata file, in addition to the actualnative C library. Then at runtime, language bindings can read thismetadata and automatically provide bindings to call into the C library.
Available versions: 1.47.1-foss-2016b, 1.47.1-intel-2016a, 1.48.0-intel-2016a, 1.53.5-intel-2017a-Python-2.7.13, 1.48.0-foss-2016b, 1.48.0-foss-2016a
Command: module load GObject-Introspection
[edit] GTK+
Homepage: https://developer.gnome.org/gtk+/stable/
Description: The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.
Available versions: 2.24.28-intel-2016a, 2.24.31-intel-2017a
Command: module load GTK+
[edit] Gdk-Pixbuf
Homepage: https://developer.gnome.org/gdk-pixbuf/stable/
Description: The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation.It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past itwas distributed as part of GTK+ 2 but it was split off into a separate packagein preparation for the change to GTK+ 3.
Available versions: 2.32.3-intel-2016a, 2.36.10-intel-2017a
Command: module load Gdk-Pixbuf
[edit] gawk
Available versions: 4.0.2-goolf-1.4.10
Command: module load gawk
[edit] gcccuda
Homepage: (none)
Description: GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.
Available versions: 2017.01, 2018b
Command: module load gcccuda
[edit] glproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: X protocol and ancillary headers
Available versions: 1.4.17-intel-2016a, 1.4.17-foss-2016b
Command: module load glproto
[edit] gnuplot
Available versions: 5.0.3-foss-2016b, 5.0.3-intel-2016a
Command: module load gnuplot
[edit] gnutls
Available versions: 3.4.7-GNU-4.9.3-2.25
Command: module load gnutls
[edit] goolf
Available versions: 1.4.10, 1.7.20
Command: module load goolf
[edit] grep
Available versions: 2.15-goolf-1.4.10
Command: module load grep
[edit] groff
Available versions: 1.22.2, 1.22.2-foss-2016b
Command: module load groff
[edit] gtool
Available versions: 0.7.5_linux_x86_64
Command: module load gtool
[edit] guile
Available versions: 1.8.8-GNU-4.9.3-2.25
Command: module load guile
[edit] GEOS
Homepage: http://trac.osgeo.org/geos
Description: GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
Available versions: 3.6.1-intel-2017a-Python-2.7.13, 3.6.1-foss-2016b-Python-2.7.12, 3.6.1-intel-2016a-Python-2.7.12, 3.6.2-foss-2018a-Python-3.6.4
Command: module load GEOS
[edit] GStreamer
Homepage: http://gstreamer.freedesktop.org/
Description: GStreamer is a library for constructing graphs of media-handlingcomponents. The applications it supports range from simpleOgg/Vorbis playback, audio/video streaming to complex audio(mixing) and video (non-linear editing) processing.
Available versions: 0.10.36-intel-2017a, 1.8.3-foss-2016b, 1.8.3-foss-2016a
Command: module load GStreamer
[edit] GConf
Homepage: https://projects.gnome.org/gconf/
Description: GConf is a system for storing application preferences.It is intended for user preferences; not configurationof something like Apache, or arbitrary data storage.
Available versions: 3.2.6-intel-2017a
Command: module load GConf
[edit] GST-plugins-base
Homepage: http://gstreamer.freedesktop.org/
Description: GStreamer is a library for constructing graphs of media-handlingcomponents. The applications it supports range from simpleOgg/Vorbis playback, audio/video streaming to complex audio(mixing) and video (non-linear editing) processing.
Available versions: 0.10.36-intel-2017a
Command: module load GST-plugins-base
[edit] gdc-client
Homepage: https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool
Description: The gdc-client provides several convenience functions over the GDC API which provides generaldownload/upload via HTTPS.
Available versions: 1.0.1-intel-2016a-Python-2.7.12, 1.3.0-intel-2016a-Python-2.7.12
Command: module load gdc-client
[edit] Gctf
Homepage: https://www.mrc-lmb.cam.ac.uk/kzhang/
Description: Gctf is a tool for real-time CTF determination and correction.
Available versions: 1.06, 1.06_devel
Command: module load Gctf
[edit] gzip
Homepage: http://www.gnu.org/software/gzip/
Description: gzip (GNU zip) is a popular data compression program as a replacement for compress
Available versions: 1.8-GCCcore-6.3.0, 1.6
Command: module load gzip
[edit] gcc
Available versions: 7.2.0
Command: module load gcc
[edit] gdb
Available versions: 8.0.1
Command: module load gdb
[edit] globalarrays
Available versions: openmpi/gcc/64/5.6.1
Command: module load globalarrays
[edit] hydrasv
Available versions: 0.5.3
Command: module load rc/hydrasv
[edit] HOMER
Available versions: 4.9
Command: module load rc/HOMER
[edit] HAPGEN2
Available versions: 2.2.0
Command: module load HAPGEN2
[edit] HISAT2
Available versions: 2.1.0-foss-2016b
Command: module load HISAT2
[edit] HPL
Available versions: 2.1-intel-2016a, 2.2-intel-2016a
Command: module load HPL
[edit] HTSeq
Available versions: 0.6.1p1-foss-2016b-Python-2.7.12, 0.6.1p1-intel-2015b-Python-2.7.8
Command: module load HTSeq
[edit] HarfBuzz
Homepage: http://www.freedesktop.org/wiki/Software/HarfBuzz
Description: HarfBuzz is an OpenType text shaping engine.
Available versions: 1.1.3-foss-2016b, 1.1.3-intel-2016a, 1.2.7-intel-2016a, 1.5.1-intel-2017a
Command: module load HarfBuzz
[edit] Hypre
Available versions: 2.10.1-intel-2015b
Command: module load Hypre
[edit] h5py
Available versions: 2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16
Command: module load h5py
[edit] help2man
Homepage: https://www.gnu.org/software/help2man/
Description: help2man produces simple manual pages from the '--help' and '--version' output of other commands.
Available versions: 1.47.4-GCCcore-6.3.0, 1.47.4, 1.47.4-GCCcore-6.4.0, 1.47.4-GCCcore-7.3.0, 1.47.4-GCCcore-5.4.0
Command: module load help2man
[edit] hwloc
Available versions: 1.10.1-GCC-4.8.4, 1.11.0-GNU-4.9.3-2.25, 1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25, 1.11.2-GCC-4.9.3-2.25, 1.11.3-GCC-5.4.0-2.26, 1.11.5-GCC-5.4.0-2.26, 1.6.2-GCC-4.7.2, 1.8.1-GCC-4.8.2, 1.11.3-intel-2017a, 1.11.3-GCC-6.1.0-2.27, 1.11.5-GCC-6.3.0-2.27, 1.11.8-GCCcore-6.4.0, 1.11.3-intel-2016a, 1.11.10-GCCcore-7.3.0, 1.11.8
Command: module load hwloc
[edit] HMMER
Homepage: http://hmmer.org/
Description: HMMER is used for searching sequence databases for homologs of protein sequences,and for making protein sequence alignments. It implements methods using probabilistic modelscalled profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and othersequence alignment and database search tools based on older scoring methodology,HMMER aims to be significantly more accurate and more able to detect remote homologsbecause of the strength of its underlying mathematical models. In the past, this strengthcame at significant computational expense, but in the new HMMER3 project, HMMER is nowessentially as fast as BLAST.
Available versions: 3.1b2-intel-2016a
Command: module load HMMER
[edit] hdf5
Available versions: 1.10.1
Command: module load hdf5
[edit] hdf5_18
Available versions: 1.8.20
Command: module load hdf5_18
[edit] hpl
Available versions: 2.2
Command: module load hpl
[edit] intel
Available versions: compiler/64/ps_2016/2016.0.047
Command: module load rc/intel
[edit] IMPUTE2
Available versions: 2.3.0_x86_64_static, 2.3.2_x86_64_static
Command: module load IMPUTE2
[edit] IPython
Available versions: 3.2.0-intel-2015b-Python-2.7.9, 5.0.0-foss-2016a-Python-3.5.1
Command: module load IPython
[edit] icc
Homepage: http://software.intel.com/en-us/intel-compilers/
Description: C and C++ compiler from Intel
Available versions: 2015.3.187, 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26
Command: module load icc
[edit] iccifort
Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Description: Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI andIntel MKL
Available versions: 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26
Command: module load iccifort
[edit] ifort
Homepage: http://software.intel.com/en-us/intel-compilers/
Description: Fortran compiler from Intel
Available versions: 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26
Command: module load ifort
[edit] iimpi
Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Description: Intel C/C++ and Fortran compilers, alongside Intel MPI.
Available versions: 7.3.5-GNU-4.9.3-2.25, 8.1.5-GCC-4.9.3-2.25, 2017a, 2016b
Command: module load iimpi
[edit] imkl
Homepage: http://software.intel.com/en-us/intel-mkl/
Description: Intel Math Kernel Library is a library of highly optimized,extensively threaded math routines for science, engineering, and financialapplications that require maximum performance. Core math functions includeBLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
Available versions: 11.2.3.187-iimpi-7.3.5-GNU-4.9.3-2.25, 11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25, 2017.1.132-iimpi-2017a, 11.3.3.210-iimpi-2016b
Command: module load imkl
[edit] impi
Homepage: http://software.intel.com/en-us/intel-mpi-library/
Description: The Intel(R) MPI Library for Linux* OS is a multi-fabric messagepassing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library forLinux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.
Available versions: 5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25, 5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25, 2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27, 5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26
Command: module load impi
[edit] inputproto
Available versions: 2.3-foss-2016a, 2.3.1-foss-2015b, 2.3.1-foss-2016a, 2.3.1-foss-2016b, 2.3.1-goolf-1.7.20, 2.3.1-intel-2015b, 2.3.1-intel-2016a
Command: module load inputproto
[edit] intel
Available versions: 2015b, 2016a, 2017a, 2016b, mic/sdk/3.8.4
Command: module load intel
[edit] ITK
Homepage: https://itk.org
Description: Insight Segmentation and Registration Toolkit (ITK) providesan extensive suite of software tools for registering and segmentingmultidimensional imaging data.
Available versions: 4.12.2-foss-2016b-Python-2.7.12
Command: module load ITK
[edit] ICU
Homepage: http://site.icu-project.org/home
Description: ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalizationsupport for software applications.
Available versions: 61.1-GCCcore-6.4.0
Command: module load ICU
[edit] ipmitool
Available versions: 1.8.18
Command: module load ipmitool
[edit] intel-tbb-oss
Available versions: ia32/2018_20180618oss, intel64/2018_20180618oss
Command: module load intel-tbb-oss
[edit] iozone
Available versions: 3_471
Command: module load iozone
[edit] jspr
Available versions: 2017-7-20
Command: module load rc/jspr
[edit] JAGS
Available versions: 3.4.0-goolf-1.4.10
Command: module load JAGS
[edit] JUnit
Available versions: 4.12-Java-1.7.0_80, 4.12-Java-1.8.0_92
Command: module load JUnit
[edit] Java
Available versions: 1.7.0_10, 1.7.0_15, 1.7.0_21, 1.7.0_80, 1.8.0_112, 1.8.0_25, 1.8.0_45, 1.8.0_60, 1.8.0_72, 1.8.0_74, 1.8.0_92, 1.8.0_121, 1.8.0_144, 1.8.0_141, 1.8.0_152, 1.8.0_162, .modulerc
Command: module load Java
[edit] Jellyfish
Homepage: http://www.genome.umd.edu/jellyfish.html
Description: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
Available versions: 2.2.4-intel-2015b, 2.2.6-foss-2016b
Command: module load Jellyfish
[edit] jupyterhub
Available versions: 0.6.1-foss-2016a-Python-3.5.1
Command: module load jupyterhub
[edit] Kent_tools
Available versions: 340
Command: module load Kent_tools
[edit] Kerberos_V5
Available versions: 1.12.2-intel-2015b
Command: module load Kerberos_V5
[edit] kbproto
Available versions: 1.0.6-foss-2015b, 1.0.6-foss-2016a, 1.0.6-goolf-1.7.20, 1.0.6-intel-2016a, 1.0.7-foss-2016a, 1.0.7-foss-2016b, 1.0.7-goolf-1.7.20, 1.0.7-intel-2015b, 1.0.7-intel-2016a
Command: module load kbproto
[edit] KING
Homepage: http://people.virginia.edu/~wc9c/KING/
Description: KING is a toolset making use of high-throughput SNPdata typically seen in a genome-wide association study (GWAS) or asequencing project. Applications of KING include family relationshipinference and pedigree error checking, population substructureidentification, forensics, gene mapping, etc.
Available versions: 2.1.2-foss-2016a
Command: module load KING
[edit] kallisto
Homepage: http://pachterlab.github.io/kallisto/
Description: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generallyof target sequences using high-throughput sequencing reads.
Available versions: 0.43.1-intel-2017a
Command: module load kallisto
[edit] lstc
Available versions: lsdyna
Command: module load rc/lstc
[edit] lumpy
Available versions: 0.2.13
Command: module load rc/lumpy
[edit] lcmodel
Available versions: 6.3
Command: module load rc/lcmodel
[edit] luajit
Available versions: 2.0.5
Command: module load rc/luajit
[edit] libarchive
Available versions: 3.1.2-10
Command: module load rc/libarchive
[edit] LAPACK
Available versions: 3.4.2-gompi-1.5.12
Command: module load LAPACK
[edit] LeadIT
Available versions: 2.1.9
Command: module load LeadIT
[edit] LibTIFF
Homepage: http://www.remotesensing.org/libtiff/
Description: tiff: Library and tools for reading and writing TIFF data files
Available versions: 4.0.3-foss-2016b, 4.0.4-goolf-1.7.20, 4.0.4-intel-2015b, 4.0.6-foss-2016b, 4.0.6-intel-2015b, 4.0.6-intel-2016a, 4.0.7-intel-2017a, 4.0.8-intel-2017a, 3.9.7-intel-2016a, 4.0.6-intel-2016b, 4.0.9-GCCcore-6.4.0, 4.0.7-foss-2016b, 4.0.9-GCCcore-5.4.0
Command: module load LibTIFF
[edit] Lmod
Available versions: 6.3-GCC-4.8.4
Command: module load Lmod
[edit] LocusZoom
Available versions: 1.3-goolf-1.7.20
Command: module load LocusZoom
[edit] Lua
Available versions: 5.1.4-8-GCC-4.8.4
Command: module load Lua
[edit] lftp
Available versions: 4.6.4-GNU-4.9.3-2.25
Command: module load lftp
[edit] libGLU
Homepage: ftp://ftp.freedesktop.org/pub/mesa/glu/
Description: The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
Available versions: 9.0.0-foss-2016b, 9.0.0-intel-2016a, 9.0.0-intel-2016a-Mesa-11.2.1, 9.0.0-intel-2017a, 9.0.0-foss-2018a
Command: module load libGLU
[edit] libICE
Available versions: 1.0.8-foss-2016a, 1.0.8-intel-2016a, 1.0.9-foss-2016a, 1.0.9-foss-2016b, 1.0.9-intel-2015b, 1.0.9-intel-2016a
Command: module load libICE
[edit] libSM
Available versions: 1.2.1-foss-2016a, 1.2.1-intel-2016a, 1.2.2-foss-2016a, 1.2.2-foss-2016b, 1.2.2-intel-2015b, 1.2.2-intel-2016a
Command: module load libSM
[edit] libX11
Available versions: 1.6.1-foss-2016a, 1.6.3-foss-2016a, 1.6.3-foss-2016b, 1.6.3-goolf-1.7.20, 1.6.3-goolf-1.7.20-Python-2.7.9, 1.6.3-intel-2015b, 1.6.3-intel-2015b-Python-2.7.10, 1.6.3-intel-2016a
Command: module load libX11
[edit] libXau
Available versions: 1.0.8-foss-2015b, 1.0.8-foss-2016a, 1.0.8-foss-2016b, 1.0.8-goolf-1.7.20, 1.0.8-intel-2015b, 1.0.8-intel-2016a
Command: module load libXau
[edit] libXcursor
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: X Cursor management library
Available versions: 1.1.14-intel-2016a, 1.1.14-foss-2016b
Command: module load libXcursor
[edit] libXdamage
Available versions: 1.1.4-foss-2016b, 1.1.4-goolf-1.7.20, 1.1.4-intel-2016a
Command: module load libXdamage
[edit] libXdmcp
Homepage: http://www.freedesktop.org/wiki/Software/xlibs}
Available versions: 1.1.1-intel-2016a, 1.1.2-foss-2015b, 1.1.2-foss-2016a, 1.1.2-foss-2016b, 1.1.2-goolf-1.7.20, 1.1.2-intel-2015b, 1.1.2-intel-2016a
Command: module load libXdmcp
[edit] libXext
Available versions: 1.3.3-foss-2016a, 1.3.3-foss-2016b, 1.3.3-goolf-1.7.20, 1.3.3-intel-2015b, 1.3.3-intel-2016a
Command: module load libXext
[edit] libXfixes
Available versions: 5.0.1-foss-2016b, 5.0.1-goolf-1.7.20, 5.0.1-intel-2015b, 5.0.1-intel-2016a
Command: module load libXfixes
[edit] libXfont
Available versions: 1.5.1-foss-2016b, 1.5.1-goolf-1.7.20, 1.5.1-intel-2016a, 1.5.1-intel-2016a-freetype-2.6.3
Command: module load libXfont
[edit] libXft
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: X11 client-side library
Available versions: 2.3.2-foss-2016a, 2.3.2-intel-2016a, 2.3.2-foss-2016b
Command: module load libXft
[edit] libXi
Available versions: 1.7.4-intel-2015b, 1.7.6-goolf-1.7.20, 1.7.6-intel-2016a
Command: module load libXi
[edit] libXinerama
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: Xinerama multiple monitor library
Available versions: 1.1.3-intel-2016a, 1.1.3-foss-2016b
Command: module load libXinerama
[edit] libXmu
Available versions: 1.1.2-foss-2016a, 1.1.2-intel-2016a
Command: module load libXmu
[edit] libXp
Available versions: 1.0.3-foss-2016a, 1.0.3-goolf-1.7.20, 1.0.3-intel-2016a
Command: module load libXp
[edit] libXpm
Available versions: 3.5.11-foss-2016a, 3.5.11-intel-2016a
Command: module load libXpm
[edit] libXrandr
Available versions: 1.5.0-goolf-1.7.20, 1.5.0-intel-2016a
Command: module load libXrandr
[edit] libXrender
Available versions: 0.9.9-foss-2016a, 0.9.9-foss-2016b, 0.9.9-goolf-1.7.20, 0.9.9-intel-2015b, 0.9.9-intel-2016a
Command: module load libXrender
[edit] libXt
Available versions: 1.1.4-foss-2016a, 1.1.5-foss-2016a, 1.1.5-foss-2016b, 1.1.5-intel-2015b, 1.1.5-intel-2016a
Command: module load libXt
[edit] libcerf
Available versions: 1.4-foss-2016b, 1.4-intel-2016a
Command: module load libcerf
[edit] libdrm
Homepage: http://dri.freedesktop.org
Description: Direct Rendering Manager runtime library.
Available versions: 2.4.67-foss-2016b, 2.4.67-goolf-1.7.20, 2.4.67-intel-2016a, 2.4.68-intel-2016a, 2.4.70-foss-2016b, 2.4.76-intel-2017a, 2.4.88-GCCcore-6.4.0, 2.4.91-GCCcore-6.4.0, 2.4.91-GCCcore-5.4.0
Command: module load libdrm
[edit] libfontenc
Available versions: 1.1.3-foss-2016b, 1.1.3-goolf-1.7.20, 1.1.3-intel-2016a
Command: module load libfontenc
[edit] libgcrypt
Homepage: https://gnupg.org/related_software/libgcrypt/index.html
Description: Libgpg-error is a small library that defines common error values for all GnuPG components.
Available versions: 1.6.5-intel-2016a, 1.6.5-foss-2016a, 1.6.5-intel-2017a
Command: module load libgcrypt
[edit] libgd
Homepage: https://libgd.github.io/
Description: GD is an open source code library for the dynamic creation of images by programmers.
Available versions: 2.1.0-intel-2016a, 2.1.1-foss-2016b, 2.1.1-intel-2016a, 2.2.3-intel-2016a, 2.2.4-intel-2017a
Command: module load libgd
[edit] libglade
Available versions: 2.6.4-intel-2016a
Command: module load libglade
[edit] libgpg-error
Homepage: https://gnupg.org/related_software/libgpg-error/index.html
Description: Libgpg-error is a small library that defines common error values for all GnuPG components.
Available versions: 1.21-intel-2016a, 1.21-foss-2016a, 1.21-foss-2016b, 1.21-intel-2017a
Command: module load libgpg-error
[edit] libgtextutils
Available versions: 0.6.1-intel-2015b
Command: module load libgtextutils
[edit] libidn
Available versions: 1.32-GNU-4.9.3-2.25
Command: module load libidn
[edit] libjpeg-turbo
Homepage: http://sourceforge.net/projects/libjpeg-turbo/
Description: libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD toaccelerate baseline JPEG compression and decompression. libjpeg is a librarythat implements JPEG image encoding, decoding and transcoding.
Available versions: 1.3.1-intel-2016a, 1.4.0-goolf-1.7.20, 1.4.1-foss-2015b, 1.4.2-foss-2016a, 1.4.2-foss-2016b, 1.4.2-intel-2015b, 1.4.2-intel-2016a, 1.5.0-foss-2016a, 1.5.0-foss-2016b, 1.5.0-intel-2015b, 1.5.0-intel-2016a, 1.5.1-intel-2017a, 1.5.2-GCCcore-6.3.0, 1.5.2-GCCcore-6.4.0, 1.5.0-intel-2017a, 1.5.0-intel-2016b, 1.5.3-GCCcore-6.4.0, 1.5.1-foss-2016b, 1.5.3-GCCcore-5.4.0
Command: module load libjpeg-turbo
[edit] libpciaccess
Available versions: 0.13.4-foss-2016b, 0.13.4-goolf-1.7.20, 0.13.4-intel-2016a
Command: module load libpciaccess
[edit] libpthread-stubs
Available versions: 0.3-foss-2015b, 0.3-foss-2016a, 0.3-foss-2016b, 0.3-goolf-1.7.20, 0.3-intel-2015b, 0.3-intel-2016a
Command: module load libpthread-stubs
[edit] libsodium
Available versions: 1.0.8-foss-2016a
Command: module load libsodium
[edit] libtasn1
Available versions: 4.7-GNU-4.9.3-2.25
Command: module load libtasn1
[edit] libtool
Homepage: http://www.gnu.org/software/libtool
Description: GNU libtool is a generic library support script. Libtool hides the complexity of using shared librariesbehind a consistent, portable interface.
Available versions: 2.4.2-foss-2016a, 2.4.2-intel-2016a, 2.4.5-GCC-4.8.4, 2.4.6, 2.4.6-GCC-4.8.4, 2.4.6-GCC-4.9.3-2.25, 2.4.6-GNU-4.9.3-2.25, 2.4.6-foss-2016a, 2.4.6-foss-2016b, 2.4.6-goolf-1.7.20, 2.4.6-intel-2015b, 2.4.6-intel-2016a, 2.4.6-GCCcore-6.3.0, 2.4.6-GCC-5.4.0-2.26, 2.4.6-intel-2017a, 2.4.6-GCCcore-6.4.0, 2.4.6-GCCcore-7.3.0, 2.4.6-GCCcore-5.4.0
Command: module load libtool
[edit] libunistring
Available versions: 0.9.3-GNU-4.9.3-2.25
Command: module load libunistring
[edit] libxcb
Available versions: 1.11-goolf-1.7.20-Python-2.7.9, 1.11.1-foss-2016a, 1.11.1-foss-2016b, 1.11.1-goolf-1.7.20, 1.11.1-intel-2015b, 1.11.1-intel-2015b-Python-2.7.10, 1.11.1-intel-2016a, 1.8-foss-2016a-Python-2.7.3
Command: module load libxcb
[edit] libxkbcommon
Available versions: 0.6.1-intel-2016a
Command: module load libxkbcommon
[edit] libxslt
Homepage: http://xmlsoft.org/
Description: Libxslt is the XSLT C library developed for the GNOME project(but usable outside of the Gnome platform).
Available versions: 1.1.28-intel-2016a, 1.1.28-foss-2016a, 1.1.29-intel-2016a, 1.1.32-intel-2016a, 1.1.29-intel-2017a
Command: module load libxslt
[edit] libsndfile
Homepage: http://www.mega-nerd.com/libsndfile
Description: Libsndfile is a C library for reading and writing files containing sampled sound(such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
Available versions: 1.0.28-intel-2017a, 1.0.28-GCCcore-6.4.0
Command: module load libsndfile
[edit] libyaml
Homepage: http://pyyaml.org/wiki/LibYAML
Description: LibYAML is a YAML 1.1 parser and emitter written in C.
Available versions: 0.1.6-intel-2016a, 0.1.6-intel-2017a, 0.1.7-intel-2016a
Command: module load libyaml
[edit] libspatialindex
Homepage: http://libspatialindex.github.io
Description: C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API
Available versions: 1.8.5-foss-2016b, 1.8.5-intel-2016a
Command: module load libspatialindex
[edit] libspatialite
Homepage: https://www.gaia-gis.it/fossil/libspatialite/home
Description: SpatiaLite is an open source library intended to extend the SQLite core to supportfully fledged Spatial SQL capabilities.
Available versions: 4.3.0a-foss-2016b, 4.3.0a-intel-2016a
Command: module load libspatialite
[edit] LoFreq
Homepage: http://csb5.github.io/lofreq
Description: Fast and sensitive variant calling from next-gen sequencing data
Available versions: 2.1.2-intel-2017a-Python-2.7.12
Command: module load LoFreq
[edit] LibUUID
Homepage: http://sourceforge.net/projects/libuuid/
Description: Portable uuid C library
Available versions: 1.0.3-foss-2016a
Command: module load LibUUID
[edit] LAME
Homepage: http://lame.sourceforge.net/
Description: LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
Available versions: 3.99.5-foss-2016b
Command: module load LAME
[edit] LZO
Homepage: http://www.oberhumer.com/opensource/lzo/
Description: Portable lossless data compression library
Available versions: 2.10-foss-2016b
Command: module load LZO
[edit] libgeotiff
Homepage: https://directory.fsf.org/wiki/Libgeotiff
Description: Library for reading and writing coordinate system information from/to GeoTIFF files
Available versions: 1.4.2-foss-2018a
Command: module load libgeotiff
[edit] lua
Available versions: 5.3.4
Command: module load lua
[edit] lapack
Available versions: gcc/64/3.8.0
Command: module load lapack
[edit] MEGA2
Available versions: 4.9.1
Command: module load rc/MEGA2
[edit] Mathematica
Available versions: 10.3
Command: module load rc/Mathematica
[edit] manta
Available versions: 1.0.3
Command: module load rc/manta
[edit] mat
Available versions: test
Command: module load rc/mat
[edit] matlab
Available versions: R2012a, R2013a, R2015a, R2015b, R2016a, R2016b, R2017a, R2018a, R2017b, R2019a
Command: module load rc/matlab
[edit] metasv
Available versions: 0.5.2
Command: module load rc/metasv
[edit] mriconvert
Available versions: 2.0.8
Command: module load rc/mriconvert
[edit] maskface
Available versions: 12272017
Command: module load rc/maskface
[edit] M4
Homepage: http://www.gnu.org/software/m4/m4.html
Description: GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatiblealthough it has some extensions (for example, handling more than 9 positional parameters to macros).GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
Available versions: 1.4.16-foss-2016a, 1.4.17, 1.4.17-GCC-4.8.4, 1.4.17-GCC-4.9.3-2.25, 1.4.17-GCC-4.9.3-binutils-2.25, 1.4.17-GCCcore-4.9.3, 1.4.17-GCCcore-5.4.0, 1.4.17-GNU-4.9.3-2.25, 1.4.17-foss-2016a, 1.4.17-foss-2016b, 1.4.17-goolf-1.7.20, 1.4.17-intel-2015b, 1.4.17-intel-2016a, 1.4.18-GCCcore-6.3.0, 1.4.17-GCCcore-6.1.0, 1.4.17-GCC-5.4.0-2.26, 1.4.17-intel-2017a, 1.4.16, 1.4.18, 1.4.18-GCCcore-6.4.0, 1.4.18-GCCcore-7.3.0, 1.4.18-GCCcore-5.4.0
Command: module load M4
[edit] MACH
Available versions: 1.0.18
Command: module load MACH
[edit] MACS
Available versions: 1.4.2-1-goolf-1.7.20-Python-2.7.5
Command: module load MACS
[edit] MOSAIK
Homepage: https://code.google.com/p/mosaik-aligner/
Description: MOSAIK is a reference-guided aligner for next-generationsequencing technologies
Available versions: 2.2.28-intel-2016a-20140425-24cf06
Command: module load MOSAIK
[edit] MPICH
Available versions: 3.0.4-GCC-4.8.1
Command: module load MPICH
[edit] MRIcroGL
Available versions: 09302016
Command: module load MRIcroGL
[edit] MRIcron
Available versions: 06_22_15
Command: module load MRIcron
[edit] MRtrix
Available versions: 0.3.14-intel-2016a-Python-2.7.11, 0.3.16-intel-2016a-Python-2.7.11
Command: module load MRtrix
[edit] MUSCLE
Homepage: http://drive5.com/muscle/
Description: MUSCLE is one of the best-performing multiple alignment programsaccording to published benchmark tests, with accuracy and speed that are consistentlybetter than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most userslearn everything they need to know about MUSCLE in a few minutes—only a handful ofcommand-line options are needed to perform common alignment tasks.
Available versions: 3.8.31-intel-2016a
Command: module load MUSCLE
[edit] MVAPICH2
Available versions: 2.2b-GCC-4.9.3-2.25
Command: module load MVAPICH2
[edit] Maq
Available versions: 0.7.0
Command: module load Maq
[edit] Mathematica
Available versions: 11.0.1
Command: module load Mathematica
[edit] Maven
Homepage: http://maven.apache.org/index.html}
Available versions: 3.3.9
Command: module load Maven
[edit] Mercurial
Homepage: http://mercurial.selenic.com/
Description: Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface.
Available versions: 2.5.2-goolf-1.7.20-Python-2.7.3, 3.8.3-foss-2016a-Python-2.7.11, 3.8.3-intel-2016a-Python-2.7.11, 3.2.4-foss-2015b-Python-2.7.9
Command: module load Mercurial
[edit] Mesa
Homepage: http://www.mesa3d.org/
Description: Mesa is an open-source implementation of the OpenGL specification -a system for rendering interactive 3D graphics.
Available versions: 11.1.2-intel-2016a, 11.2.1-intel-2016a, 12.0.2-foss-2016b, 17.0.2-intel-2017a, 17.3.6-foss-2018a, 11.1.2-foss-2016b
Command: module load Mesa
[edit] Minimac2
Available versions: 2014.9.15-intel-2015b
Command: module load Minimac2
[edit] Minimac3
Available versions: 1.0.10-intel-2015b
Command: module load Minimac3
[edit] makedepend
Homepage: http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html
Description: The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.
Available versions: 1.0.5-intel-2016a, 1.0.5-foss-2016b
Command: module load makedepend
[edit] matplotlib
Homepage: http://matplotlib.org
Description: matplotlib is a python 2D plotting library which produces publication quality figures in a variety ofhardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the pythonand ipython shell, web application servers, and six graphical user interface toolkits.
Available versions: 1.3.1-intel-2015b-Python-2.7.8, 1.5.1-intel-2016a-Python-2.7.11, 1.5.3-foss-2016b-Python-2.7.12, 2.0.0-foss-2016b-Python-2.7.12, 2.0.2-foss-2016b-Python-2.7.12, 2.0.2-intel-2017a-Python-2.7.13-libpng-1.6.29, 1.5.1-foss-2016a-Python-2.7.11
Command: module load matplotlib
[edit] motif
Available versions: 2.3.5-foss-2016a, 2.3.5-intel-2016a, 2.3.7-intel-2016a
Command: module load motif
[edit] MACS2
Homepage: https://github.com/taoliu/MACS/
Description: Model Based Analysis for ChIP-Seq data
Available versions: 2.1.0.20150731-foss-2016a-Python-2.7.11, 2.1.1.20160309-foss-2016a-Python-2.7.11
Command: module load MACS2
[edit] MEME
Homepage: http://meme-suite.org/
Description: The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) orGLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs usingMAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associatemotifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichmentusing SpaMo or CentriMo.
Available versions: 4.12.0-foss-2016a
Command: module load MEME
[edit] MultiQC
Available versions: 0.9-foss-2016b-Python-2.7.12, 1.2-foss-2016b-Python-2.7.12, 1.4-foss-2016b-Python-2.7.12, 0.8, 0.8~
Command: module load MultiQC
[edit] Mono
Homepage: http://www.mono-project.com/
Description: An open source, cross-platform, implementation of C# and the CLR that isbinary compatible with Microsoft.NET.
Available versions: 4.8.0.495-intel-2017a, 5.2.0.224-intel-2017a
Command: module load Mono
[edit] MaSuRCA
Homepage: http://www.genome.umd.edu/masurca.html
Description: MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graphand Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containingonly short reads from Illumina sequencing or a mixture of short reads and long reads(Sanger, 454, Pacbio and Nanopore).
Available versions: 3.2.4-foss-2018a, 3.2.6-foss-2018a
Command: module load MaSuRCA
[edit] minimap2
Homepage: https://github.com/lh3/minimap2
Description: Minimap2 is a fast sequence mapping and alignment program that can find overlaps betweenlong noisy reads, or map long reads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replaceBWA-MEM for long reads and contig alignment.
Available versions: 2.0rc1-foss-2016b
Command: module load minimap2
[edit] MotionCor2
Homepage: http://msg.ucsf.edu/em/software/motioncor2.html
Description: MotionCor2 is a multi-GPU program that corrects beam-induced sample motion recordedon dose fractionated movie stacks
Available versions: 1.0.4, 1.0.5
Command: module load MotionCor2
[edit] mpich
Available versions: ge/gcc/64/3.2.1
Command: module load mpich
[edit] mpiexec
Available versions: 0.84_432
Command: module load mpiexec
[edit] mvapich2
Available versions: gcc/64/2.3b
Command: module load mvapich2
[edit] NAMD
Available versions: 2.12b1-gpu, 2.12, 2.13b2-gpu
Command: module load rc/NAMD
[edit] nccl
Homepage: https://developer.nvidia.com/nccl
Description: The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs.
Available versions: 1.3.4-1
Command: module load rc/nccl
[edit] ncdu
Available versions: 1.13-20.1
Command: module load rc/ncdu
[edit] nighres
Available versions: 1.1.0b1
Command: module load rc/nighres
[edit] NASM
Homepage: http://www.nasm.us/
Description: NASM: General-purpose x86 assembler
Available versions: 2.07-intel-2015b, 2.07-intel-2016a, 2.11.06-goolf-1.7.20, 2.11.08-foss-2015b, 2.11.08-foss-2016a, 2.11.08-foss-2016b, 2.11.08-intel-2015b, 2.11.08-intel-2016a, 2.12.02-foss-2016a, 2.12.02-foss-2016b, 2.12.02-intel-2015b, 2.12.02-intel-2016a, 2.12.02-intel-2017a, 2.13.01-GCCcore-6.3.0, 2.13.01-GCCcore-6.4.0, 2.12.02-intel-2016b, 2.13.03-GCCcore-6.4.0, 2.13.03-GCCcore-5.4.0
Command: module load NASM
[edit] NGS
Available versions: 1.2.5-foss-2016b
Command: module load NGS
[edit] ncbi-vdb
Available versions: 2.7.0-foss-2016b
Command: module load ncbi-vdb
[edit] netCDF
Homepage: http://www.unidata.ucar.edu/software/netcdf/
Description: NetCDF (network Common Data Form) is a set of software librariesand machine-independent data formats that support the creation, access, and sharing of array-orientedscientific data.
Available versions: 4.3.3.1-foss-2016a, 4.3.3.1-intel-2016a, 4.4.0-intel-2016a, 4.4.1-foss-2016a, 4.4.1-foss-2016b, 4.4.1-intel-2015b, 4.4.1-intel-2016a, 4.4.1.1-intel-2017a, 4.4.1.1-foss-2016b, 4.4.1.1-intel-2016a, 4.6.0-foss-2018a
Command: module load netCDF
[edit] nodejs
Available versions: 4.4.7-foss-2016a
Command: module load nodejs
[edit] numactl
Homepage: http://oss.sgi.com/projects/libnuma/
Description: The numactl program allows you to run your application program on specificcpu's and memory nodes. It does this by supplying a NUMA memory policy tothe operating system before running your program. The libnuma library providesconvenient ways for you to add NUMA memory policies into your own program.
Available versions: 2.0.10-GCC-4.8.4, 2.0.10-GNU-4.9.3-2.25, 2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25, 2.0.11-GCC-4.9.3-2.25, 2.0.11-GCC-5.4.0-2.26, 2.0.11-GCCcore-6.3.0, 2.0.11-intel-2017a, 2.0.11-GCC-6.1.0-2.27, 2.0.11-GCC-6.3.0-2.27, 2.0.11-GCCcore-6.4.0, 2.0.11-intel-2016a, 2.0.11-GCCcore-7.3.0
Command: module load numactl
[edit] numpy
Homepage: http://www.numpy.org
Description: NumPy is the fundamental package for scientific computing with Python. It contains among other things:a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortrancode, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses,NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can bedefined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.
Available versions: 1.10.4-intel-2016a-Python-2.7.11, 1.8.2-intel-2015b-Python-2.7.11, 1.8.2-foss-2016a-Python-2.7.11, 1.10.1-goolf-1.7.20-Python-2.7.11
Command: module load numpy
[edit] NLopt
Homepage: http://ab-initio.mit.edu/wiki/index.php/NLopt
Description: NLopt is a free/open-source library for nonlinear optimization,providing a common interface for a number of different free optimization routinesavailable online as well as original implementations of various other algorithms.
Available versions: 2.4.2-intel-2017a, 2.4.2-foss-2016b, 2.4.2-foss-2018a
Command: module load NLopt
[edit] NiBabel
Homepage: https://nipy.github.io/nibabel
Description: NiBabel provides read/write access to some common medical and neuroimaging file formats,including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECATas well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry andannotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.
Available versions: 2.1.0-intel-2017a-Python-2.7.13
Command: module load NiBabel
[edit] ngmlr
Homepage: https://github.com/philres/ngmlr
Description: Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to areference genome with a focus on reads that span structural variations.
Available versions: 0.2.6-foss-2016b
Command: module load ngmlr
[edit] NCBI-Toolkit
Homepage: http://ncbi.github.io/cxx-toolkit/
Description: The NCBI Toolkit is a collection of utilities developed for theproduction and distribution of GenBank, Entrez, BLAST, and related servicesby the National Center for Biotechnology Information.
Available versions: 18.0.0-intel-2017a
Command: module load NCBI-Toolkit
[edit] NCCL
Homepage: https://developer.nvidia.com/nccl
Description: The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs.
Available versions: 2.2.13-CUDA-9.2.148.1, 2.2.13-CUDA-8.0.61
Command: module load NCCL
[edit] netcdf
Available versions: gcc/64/4.5.0
Command: module load netcdf
[edit] netperf
Available versions: 2.7.0
Command: module load netperf
[edit] openscenegraph
Available versions: 3.2.1
Command: module load rc/openscenegraph
[edit] OTF
Available versions: 1.12.4-gompi-1.5.12
Command: module load OTF
[edit] OpenPGM
Available versions: 5.2.122-foss-2016a, 5.2.122-intel-2015b
Command: module load OpenPGM
[edit] OpenSSL
Homepage: http://www.openssl.org/
Description: The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured,and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1)protocols as well as a full-strength general purpose cryptography library.
Available versions: 1.0.2g-GCCcore-4.9.3, 1.0.2h-foss-2016b
Command: module load OpenSSL
[edit] OpenMM
Homepage: https://simtk.org/home/openmm
Description: OpenMM is a toolkit for molecular simulation.
Available versions: 6.3-intel-2016a-Python-2.7.11
Command: module load OpenMM
[edit] openmpi
Available versions: mlnx/gcc/64/3.1.1rc1, gcc/64/1.10.7
Command: module load openmpi
[edit] openblas
Available versions: .version, dynamic/0.2.20
Command: module load openblas
[edit] parsync
Available versions: 1.69
Command: module load rc/parsync
[edit] PCRE
Homepage: http://www.pcre.org/
Description: The PCRE library is a set of functions that implement regular expressionpattern matching using the same syntax and semantics as Perl 5.
Available versions: 8.38-foss-2016a, 8.38-foss-2016b, 8.38-intel-2015b, 8.38-intel-2016a, 8.39-intel-2015b, 8.39-intel-2016a, 8.39-foss-2016b, 8.40-intel-2017a, 8.41-GCCcore-6.3.0, 8.12-goolf-1.4.10, 8.12-intel-2016a, 8.41-GCCcore-6.4.0, 8.39-intel-2016b, 8.40-foss-2016b, 8.41-GCCcore-5.4.0
Command: module load PCRE
[edit] PDT
Available versions: 3.20-goolf-1.7.20
Command: module load PDT
[edit] PETSc
Available versions: 3.6.3-intel-2015b-Python-2.7.11
Command: module load PETSc
[edit] PGI
Homepage: http://www.pgroup.com/
Description: C, C++ and Fortran compilers from The Portland Group - PGI
Available versions: 17.10-GCC-6.3.0-2.27, 17.4-GCC-6.3.0-2.27, 18.5-GCC-6.4.0-2.28
Command: module load PGI
[edit] PHASE
Available versions: 2.1.1
Command: module load PHASE
[edit] PIL
Available versions: 1.1.7-intel-2015b-Python-2.7.11, 1.1.7-intel-2016a-Python-2.7.11
Command: module load PIL
[edit] PROJ
Homepage: http://trac.osgeo.org/proj/
Description: Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates
Available versions: 4.9.2-foss-2016a, 4.9.2-foss-2016b, 4.9.2-intel-2015b, 4.9.2-intel-2016a, 4.9.3-intel-2017a, 4.9.3-foss-2016b, 4.9.3-intel-2016a, 5.0.0-foss-2018a
Command: module load PROJ
[edit] Pango
Homepage: http://www.pango.org/
Description: Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
Available versions: 1.39.0-foss-2016b, 1.39.0-intel-2016a, 1.40.1-intel-2016a, 1.40.12-intel-2017a
Command: module load Pango
[edit] Pindel
Homepage: http://gmt.genome.wustl.edu/packages/pindel/
Description: Pindel can detect breakpoints of large deletions, medium sizedinsertions, inversions, tandem duplications and other structural variants at single-basedresolution from next-gen sequence data. It uses a pattern growth approach to identify thebreakpoints of these variants from paired-end short reads.
Available versions: 0.2.5b8-foss-2016b
Command: module load Pindel
[edit] ProbABEL
Available versions: 0.5.0
Command: module load ProbABEL
[edit] PyCairo
Available versions: 1.10.0-intel-2016a-Python-2.7.11
Command: module load PyCairo
[edit] PyGObject
Available versions: 2.28.6-intel-2016a-Python-2.7.11
Command: module load PyGObject
[edit] PyGTK
Available versions: 2.24.0-intel-2016a-Python-2.7.11
Command: module load PyGTK
[edit] PyQt
Available versions: 4.11.3-goolf-1.7.20-Python-2.7.9, 4.11.4-foss-2016a-Python-2.7.11, 4.11.4-intel-2016a-Python-2.7.11
Command: module load PyQt
[edit] PyZMQ
Available versions: 14.7.0-intel-2015b-Python-2.7.9-zmq3, 15.3.0-foss-2016a-Python-3.5.1-zmq4
Command: module load PyZMQ
[edit] Pygments
Available versions: 2.0.2-intel-2015b-Python-2.7.9
Command: module load Pygments
[edit] Pysam
Available versions: 0.9.1.4-foss-2016a-Python-2.7.12, 0.9.1.4-foss-2016b-Python-2.7.12
Command: module load Pysam
[edit] p11-kit
Available versions: 0.23.2-GNU-4.9.3-2.25
Command: module load p11-kit
[edit] parallel
Available versions: 20150822-GCC-4.9.2
Command: module load parallel
[edit] path.py
Available versions: 8.2.1-foss-2016a-Python-3.5.1
Command: module load path.py
[edit] perl-app-cpanminus
Available versions: 1.7039
Command: module load perl-app-cpanminus
[edit] pixman
Homepage: http://www.pixman.org/
Description: Pixman is a low-level software library for pixel manipulation, providingfeatures such as image compositing and trapezoid rasterization. Importantusers of pixman are the cairo graphics library and the X server.
Available versions: 0.34.0-foss-2016b, 0.34.0-intel-2015b, 0.34.0-intel-2016a, 0.34.0-GCCcore-6.3.0, 0.34.0-GCCcore-6.4.0, 0.34.0-foss-2016a, 0.34.0-intel-2016b, 0.32.6-intel-2016a, 0.34.0-GCCcore-5.4.0
Command: module load pixman
[edit] pkgconfig
Available versions: 1.1.0-intel-2016a-Python-2.7.11
Command: module load pkgconfig
[edit] printproto
Available versions: 1.0.5-foss-2015b, 1.0.5-foss-2016a, 1.0.5-goolf-1.7.20, 1.0.5-intel-2016a
Command: module load printproto
[edit] prompt-toolkit
Available versions: 1.0.3-foss-2016a-Python-3.5.1
Command: module load prompt-toolkit
[edit] pysqlite
Available versions: 2.6.3-intel-2015b-Python-2.7.9
Command: module load pysqlite
[edit] protobuf
Homepage: https://github.com/google/protobuf/
Description: Google Protocol Buffers
Available versions: 3.3.0-intel-2017a
Command: module load protobuf
[edit] protobuf-python
Homepage: https://github.com/google/protobuf/
Description: Python Protocol Buffers runtime library.
Available versions: 3.3.0-intel-2017a-Python-3.6.1
Command: module load protobuf-python
[edit] PyYAML
Homepage: https://pypi.python.org/pypi/PyYAML/
Description: PyYAML is a YAML parser and emitter for the Python programming language.
Available versions: 3.12-intel-2016a-Python-3.5.1
Command: module load PyYAML
[edit] prodigal
Homepage: http://prodigal.ornl.gov/
Description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)is a microbial (bacterial and archaeal) gene finding program developedat Oak Ridge National Laboratory and the University of Tennessee.
Available versions: 2.6.2-GCC-4.9.3-binutils-2.25
Command: module load prodigal
[edit] Pillow
Homepage: http://pillow.readthedocs.org/
Description: Pillow is the 'friendly PIL fork' by Alex Clark and Contributors.PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
Available versions: 4.3.0-intel-2017a-Python-2.7.13
Command: module load Pillow
[edit] p7zip
Homepage: http://p7zip.sourceforge.net/
Description: p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip) for Unix.7-Zip is a file archiver with highest compression ratio.
Available versions: 9.38.1
Command: module load p7zip
[edit] patchelf
Homepage: http://nixos.org/patchelf.html
Description: PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
Available versions: 0.9-intel-2016a, 0.9-foss-2016b
Command: module load patchelf
[edit] PCRE2
Homepage: http://www.pcre.org/
Description: The PCRE library is a set of functions that implement regular expression pattern matching using the same syntaxand semantics as Perl 5.
Available versions: 10.21-foss-2016b, 10.31-foss-2018a
Command: module load PCRE2
[edit] qdirstat
Available versions: 1.4
Command: module load rc/qdirstat
[edit] Qt
Available versions: 4.8.6-goolf-1.7.20, 4.8.7-foss-2016a, 4.8.7-foss-2016b, 4.8.7-intel-2016a
Command: module load Qt
[edit] Qwt
Homepage: http://qwt.sourceforge.net/
Description: The Qwt library contains GUI Components and utility classes which are primarily useful for programswith a technical background.
Available versions: 6.1.3-foss-2016b, 6.1.3-intel-2016a
Command: module load Qwt
[edit] QwtPolar
Homepage: http://qwtpolar.sourceforge.net/
Description: The QwtPolar library contains classes for displaying values on a polar coordinate system.
Available versions: 1.1.1-foss-2016b, 1.1.1-intel-2016a
Command: module load QwtPolar
[edit] QUAST
Homepage: http://quast.sourceforge.net/quast
Description: QUAST evaluates genome assemblies.
Available versions: 4.4-foss-2016a-Python-2.7.11, 4.6.3-foss-2016a-Python-2.7.11
Command: module load QUAST
[edit] QIIME
Available versions: qiime-dependencies
Command: module load QIIME
[edit] QWRAP
Available versions: v3
Command: module load QWRAP
[edit] RStudio
Available versions: 1.0.136, 1.0.44
Command: module load rc/RStudio
[edit] relion
Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description: RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computerprogram that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D classaverages in electron cryo-microscopy (cryo-EM).
Available versions: 1.4, 2.0_beta, 2.1
Command: module load rc/relion
[edit] rserver
Available versions: 3.4.3, 3.5.2, 3.5.2_X11
Command: module load rc/rserver
[edit] R
Available versions: 2.15.3-goolf-1.7.20, 3.0.1-goolf-1.4.10-bare, 3.2.0-goolf-1.7.20, 3.2.1-goolf-1.7.20, 3.2.3-foss-2016a-bare, 3.2.3-intel-2016a-bare, 3.3.1-foss-2016b, 3.3.1-foss-2016b-no-X, 3.3.1-intel-2016a-bare, 3.4.1-intel-2017a-X11-20170314, 3.3.3-intel-2017a-X11-20170314, 3.4.3-intel-2017a-X11-20170314, .3.4.3-foss-2016b-X11-20160819.bak_20180502163551, 3.4.3-foss-2016b-X11-20160819, 3.5.0-intel-2017a-X11-20170314-bare, 3.5.0-foss-2018a-X11-20180131-bare, 3.5.1-foss-2018a-X11-20180131-bare, DESeq2.R-3.3.1-foss-2016b-no-X, DESeq2.R-3.4.3-intel-2017a-X11-20170314
Command: module load R
[edit] RAxML
Available versions: 8.1.1-goolf-1.4.10-mt-avx
Command: module load RAxML
[edit] RSeQC
Available versions: 2.6.3-goolf-1.7.20-Python-2.7.10-R-3.2.1
Command: module load RSeQC
[edit] Ruby
Available versions: 2.3.3
Command: module load Ruby
[edit] randrproto
Available versions: 1.5.0-goolf-1.7.20, 1.5.0-intel-2015b, 1.5.0-intel-2016a
Command: module load randrproto
[edit] renderproto
Available versions: 0.11-foss-2016a, 0.11-foss-2016b, 0.11-goolf-1.7.20, 0.11-intel-2015b, 0.11-intel-2016a
Command: module load renderproto
[edit] requests
Available versions: 2.7.0-intel-2015b-Python-2.7.9
Command: module load requests
[edit] ResMap
Homepage: http://resmap.sourceforge.net/
Description: ResMap (Resolution Map) is a Python (NumPy/SciPy) application with a Tkinter GUI.It is an easy to use software package for computing the local resolution of 3D density mapsstudied in structural biology, primarily electron cryo-microscopy (cryo-EM).
Available versions: 1.1.4
Command: module load ResMap
[edit] RELION
Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description: RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computerprogram that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D classaverages in electron cryo-microscopy (cryo-EM).
Available versions: 2.1-intel-2016a-CUDA-8.0.44
Command: module load RELION
[edit] Rust
Homepage: https://www.rust-lang.org
Description: Rust is a systems programming language that runs blazingly fast, prevents segfaults,and guarantees thread safety.
Available versions: 1.30.1-foss-2016b
Command: module load Rust
[edit] snakemakeslurm_local
Available versions: 4.8.0-1
Command: module load snakemakeslurm_local
[edit] SAS
Available versions: v9.4
Command: module load rc/SAS
[edit] Salmon
Available versions: 0.7.2
Command: module load rc/Salmon
[edit] soapsv
Available versions: 1.3
Command: module load rc/soapsv
[edit] snakemake
Available versions: 4.0.0, 4.8.0
Command: module load rc/snakemake
[edit] sublime_text
Available versions: 3
Command: module load rc/sublime_text
[edit] S.A.G.E.
Available versions: 6.3
Command: module load S.A.G.E.
[edit] SCOTCH
Available versions: 6.0.4-intel-2015b
Command: module load SCOTCH
[edit] SHRiMP
Available versions: 2.2.3-goolf-1.4.10
Command: module load SHRiMP
[edit] SIP
Available versions: 4.16.4-goolf-1.7.20-Python-2.7.9, 4.16.4-intel-2015b-Python-2.7.9, 4.16.8-intel-2015b-Python-2.7.9, 4.18-foss-2016a-Python-2.7.11, 4.18-intel-2016a-Python-2.7.11
Command: module load SIP
[edit] SOLAR-Eclipse
Available versions: 8.1.1
Command: module load SOLAR-Eclipse
[edit] SPAdes
Homepage: http://cab.spbu.ru/software/spades/
Description: Genome assembler for single-cell and isolates data sets
Available versions: 3.9.0-foss-2016a, 3.12.0-foss-2016b
Command: module load SPAdes
[edit] SPPARKS
Available versions: 07192016-intel-2016a
Command: module load SPPARKS
[edit] STAR-Fusion
Available versions: 0.8.0-goolf-1.4.10-Perl-5.16.3
Command: module load STAR-Fusion
[edit] STAR
Available versions: 2.5.1b-goolf-1.4.10, 2.5.2a-foss-2016a, 2.5.4b-intel-2017a, 2.5.4b-foss-2016b, 2.5.2b, 2.5.2b~
Command: module load STAR
[edit] SWIG
Homepage: http://www.swig.org/
Description: SWIG is a software development tool that connects programs written in C and C++ witha variety of high-level programming languages.
Available versions: 3.0.10-intel-2016a-Python-2.7.12-PCRE-8.39, 3.0.12-intel-2017a-Python-2.7.13, 3.0.11-foss-2016b-Python-2.7.12, 3.0.11-intel-2016a-Python-2.7.12, 3.0.8-intel-2016a-Python-2.7.11, 3.0.12-foss-2018a-Python-3.6.4, 3.0.12-foss-2018a-Python-2.7.14
Command: module load SWIG
[edit] ScientificPython
Available versions: 2.9.4-intel-2015b-Python-2.7.11
Command: module load ScientificPython
[edit] Spack
Available versions: 0.10.0
Command: module load Spack
[edit] scipy
Available versions: 0.17.0-intel-2016a-Python-2.7.11
Command: module load scipy
[edit] shapeit
Available versions: 2.r837.GLIBCv2.12_linux_x86_64
Command: module load shapeit
[edit] sympy
Available versions: 0.7.6.1-intel-2015b-Python-2.7.11
Command: module load sympy
[edit] SRA-Toolkit
Homepage: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=std
Description: The NCBI SRA Toolkit enables reading (dumping) of sequencing filesfrom the SRA database and writing (loading) files into the .sra format
Available versions: 2.5.4-1-centos_linux64, 2.8.2-1-centos_linux64
Command: module load SRA-Toolkit
[edit] sparsehash
Homepage: https://code.google.com/p/sparsehash/
Description: An extremely memory-efficient hash_mapimplementation. 2 bits/entry overhead! The SparseHash librarycontains several hash-map implementations, includingimplementations that optimize for space or speed.
Available versions: 2.0.2-foss-2016a
Command: module load sparsehash
[edit] Spark
Homepage: http://spark.apache.org
Description: Spark is Hadoop MapReduce done in memory
Available versions: 2.2.0-Hadoop-2.6-Java-1.8.0_144
Command: module load Spark
[edit] summovie
Homepage: http://grigoriefflab.janelia.org/unblur
Description: Movie frame sums can be calculated using summovie,which uses the alignment results from a prior run of Unblur.
Available versions: 1.0.2
Command: module load summovie
[edit] snakemakeslurm
Available versions: 4.8.0, 4.8.0-2, 4.8.0-1
Command: module load snakemakeslurm
[edit] scalapack
Available versions: openmpi/gcc/64/2.0.2
Command: module load scalapack
[edit] sge
Available versions: 2011.11p1
Command: module load sge
[edit] slurm
Available versions: 17.11.8
Command: module load slurm
[edit] tortoise
Available versions: 2.5.2b, 3.0.0, 3.1.2
Command: module load rc/tortoise
[edit] transdecoder
Available versions: 5.3.0
Command: module load rc/transdecoder
[edit] torch
Available versions: 7
Command: module load rc/torch
[edit] tarquin
Available versions: 4.3.10
Command: module load rc/tarquin
[edit] tcllib
Available versions: 1.19
Command: module load rc/tcllib
[edit] Tar
Available versions: 1.29-goolf-1.4.10
Command: module load Tar
[edit] Tk
Homepage: http://www.tcl.tk/
Description: Tk is an open source, cross-platform widget toolchain that provides a library of basic elements forbuilding a graphical user interface (GUI) in many different programming languages.
Available versions: 8.6.3-foss-2015b-no-X11, 8.6.3-goolf-1.7.20-no-X11, 8.6.3-intel-2015b-no-X11, 8.6.4-foss-2015b-no-X11, 8.6.4-foss-2016a-no-X11, 8.6.4-foss-2016b-no-X11, 8.6.4-goolf-1.7.20, 8.6.4-goolf-1.7.20-no-X11, 8.6.4-intel-2015b-no-X11, 8.6.4-intel-2016a-no-X11, 8.6.5-foss-2016a, 8.6.5-foss-2016b, 8.6.5-intel-2015b, 8.6.5-intel-2016a, 8.6.6-intel-2017a, 8.6.5-intel-2017a, 8.6.8-foss-2018a
Command: module load Tk
[edit] TopHat
Available versions: 2.1.0-intel-2015b, 2.1.1-foss-2016a
Command: module load TopHat
[edit] Trim_Galore
Available versions: 0.4.2-foss-2016b, 0.4.4-foss-2016b
Command: module load Trim_Galore
[edit] Trimmomatic
Available versions: 0.36-Java-1.8.0_92
Command: module load Trimmomatic
[edit] Trinity
Available versions: 2.2.0-foss-2016a
Command: module load Trinity
[edit] tabix
Available versions: 0.2.6-goolf-1.7.20, 0.2.6-intel-2015b
Command: module load tabix
[edit] tcsh
Available versions: 6.18.01-goolf-1.7.20, 6.18.01-intel-2015b, 6.19.00-foss-2015b, 6.19.00-foss-2016a, 6.19.00-foss-2016b, 6.19.00-intel-2016a
Command: module load tcsh
[edit] testpath
Available versions: 0.3-foss-2016a-Python-3.5.1
Command: module load testpath
[edit] texinfo
Homepage: https://www.gnu.org/software/texinfo/
Description: Texinfo is the official documentation format of the GNU project.
Available versions: 4.13a, 6.4-GCCcore-5.4.0
Command: module load texinfo
[edit] Tensorflow
Homepage: https://www.tensorflow.org/
Description: An open-source software library for Machine Intelligence
Available versions: 1.2.0-intel-2017a-Python-3.6.1
Command: module load Tensorflow
[edit] TransDecoder
Homepage: https://github.com/TransDecoder/TransDecoder/wiki
Description: TransDecoder identifies candidate coding regions within transcript sequences,such as those generated by de novo RNA-Seq transcript assembly using Trinity,or constructed based on RNA-Seq alignments to the genome usingTophat and Cufflinks.
Available versions: 5.1.0-intel-2017a-Perl-5.24.1
Command: module load TransDecoder
[edit] trim_galore
Available versions: 0.4.2, 0.4.2~
Command: module load trim_galore
[edit] torque
Available versions: 6.1.1
Command: module load torque
[edit] unblur
Homepage: http://grigoriefflab.janelia.org/unblur
Description: Unblur is used to align the frames of movies recorded on an electron microscopeto reduce image blurring due to beam-induced motion.It reads stacks of movies that are stored in MRC/CCP4 format.
Available versions: 1.0.2
Command: module load unblur
[edit] usearch
Available versions: 7.0.1090
Command: module load usearch
[edit] vmd
Available versions: 1.9.3
Command: module load rc/vmd
[edit] VEGAS
Available versions: 0.8.27
Command: module load VEGAS
[edit] VICUNA
Available versions: 1.3
Command: module load VICUNA
[edit] VPhaser-2
Available versions: 02112013-intel-2016a
Command: module load VPhaser-2
[edit] VTK
Homepage: http://www.vtk.org
Description: The Visualization Toolkit (VTK) is an open-source, freely available software system for3D computer graphics, image processing and visualization. VTK consists of a C++ class library and severalinterpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualizationalgorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniquessuch as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
Available versions: 7.1.1-intel-2017a-Python-2.7.13, 6.3.0-foss-2016b-Python-2.7.12
Command: module load VTK
[edit] VCFtools
Homepage: https://vcftools.github.io
Description: The aim of VCFtools is to provideeasily accessible methods for working with complexgenetic variation data in the form of VCF files.
Available versions: 0.1.14-intel-2016a-Perl-5.22.1, 0.1.15-intel-2016a-Perl-5.22.1
Command: module load VCFtools
[edit] wcwidth
Available versions: 0.1.7-foss-2016a-Python-3.5.1
Command: module load wcwidth
[edit] wxPython
Homepage: http://www.wxpython.org
Description: wxPython is a GUI toolkit for the Python programming language.It allows Python programmers to create programs with a robust,highly functional graphical user interface, simply and easily.It is implemented as a Python extension module (native code)that wraps the popular wxWidgets cross platform GUI library,which is written in C++.
Available versions: 3.0.2.0-intel-2017a-Python-2.7.13
Command: module load wxPython
[edit] wxWidgets
Homepage: http://www.wxwidgets.org/
Description: wxWidgets is a C++ library that lets developers create applications for Windows,Mac OS X, Linux and other platforms with a single code base.It has language bindings for Python, Perl, Ruby and many other languages.
Available versions: 3.0.3-intel-2016a, 3.0.3-foss-2016b
Command: module load wxWidgets
[edit] xget
Available versions: xget-public
Command: module load rc/xget
[edit] XKeyboardConfig
Available versions: 2.17-intel-2016a
Command: module load XKeyboardConfig
[edit] xbitmaps
Available versions: 1.1.1-foss-2016a, 1.1.1-intel-2016a
Command: module load xbitmaps
[edit] xcb-proto
Available versions: 1.11, 1.11-goolf-1.7.20-Python-2.7.9, 1.11-intel-2015b-Python-2.7.10, 1.7-foss-2016a-Python-2.7.3
Command: module load xcb-proto
[edit] xcb-util-image
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a
Command: module load xcb-util-image
[edit] xcb-util-keysyms
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a
Command: module load xcb-util-keysyms
[edit] xcb-util-renderutil
Available versions: 0.3.9-intel-2015b, 0.3.9-intel-2016a
Command: module load xcb-util-renderutil
[edit] xcb-util-wm
Available versions: 0.4.1-intel-2015b, 0.4.1-intel-2016a
Command: module load xcb-util-wm
[edit] xcb-util
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a
Command: module load xcb-util
[edit] xextproto
Available versions: 7.2.1-foss-2016a, 7.2.1-intel-2016a, 7.3.0-foss-2015b, 7.3.0-foss-2016a, 7.3.0-foss-2016b, 7.3.0-goolf-1.7.20, 7.3.0-intel-2015b, 7.3.0-intel-2016a
Command: module load xextproto
[edit] xf86vidmodeproto
Available versions: 2.3.1-intel-2016a
Command: module load xf86vidmodeproto
[edit] xineramaproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs
Description: X protocol and ancillary headers for xinerama
Available versions: 1.2.1-intel-2016a, 1.2.1-foss-2016b
Command: module load xineramaproto
[edit] xorg-macros
Available versions: 1.19.0-foss-2016a, 1.19.0-foss-2016b, 1.19.0-goolf-1.7.20, 1.19.0-intel-2016a
Command: module load xorg-macros
[edit] xprop
Homepage: http://www.x.org/wiki/
Description: The xprop utility is for displaying window and font properties in an X server.One window or font is selected using the command line arguments or possiblyin the case of a window, by clicking on the desired window. A list ofproperties is then given, possibly with formatting information.
Available versions: 1.2.2-intel-2016a, 1.2.2-intel-2017a, 1.2.2-foss-2016b
Command: module load xprop
[edit] xproto
Available versions: 7.0.23-foss-2016a, 7.0.26-intel-2016a, 7.0.27-foss-2015b, 7.0.27-goolf-1.7.20, 7.0.28-foss-2016a, 7.0.28-foss-2016b, 7.0.28-goolf-1.7.20, 7.0.28-intel-2015b, 7.0.28-intel-2016a
Command: module load xproto
[edit] xtrans
Homepage: http://www.freedesktop.org/wiki/Software/xlibs}
Available versions: 1.2-foss-2016a, 1.3.4-intel-2016a, 1.3.5-foss-2015b, 1.3.5-foss-2016a, 1.3.5-foss-2016b, 1.3.5-goolf-1.7.20, 1.3.5-intel-2015b, 1.3.5-intel-2016a
Command: module load xtrans
[edit] Xerces-C++
Homepage: http://xerces.apache.org/xerces-c/
Description: Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs.
Available versions: 3.1.2-intel-2015b
Command: module load Xerces-C++
[edit] XQilla
Homepage: http://xqilla.sourceforge.net/HomePage
Description: XQilla is an XQuery and XPath 2 library and command line utility written in C++,implemented on top of the Xerces-C++ library.
Available versions: 2.3.2-intel-2015b
Command: module load XQilla
[edit] x264
Homepage: http://www.videolan.org/developers/x264.html
Description: x264 is a free software library and application for encoding video streams into the H.264/MPEG-4AVC compression format, and is released under the terms of the GNU GPL.
Available versions: 20160614-foss-2016b
Command: module load x264
[edit] x265
Homepage: http://x265.org/
Description: x265 is a free software library and application for encoding video streams into the H.265AVC compression format, and is released under the terms of the GNU GPL.
Available versions: 2.4-foss-2016b
Command: module load x265
[edit] Yasm
Homepage: http://www.tortall.net/projects/yasm/
Description: Yasm: Complete rewrite of the NASM assembler with BSD license
Available versions: 1.3.0-intel-2015b, 1.3.0-foss-2016b
Command: module load Yasm
[edit] zlib
Homepage: http://www.zlib.net/
Description: zlib is designed to be a free, general-purpose, legally unencumbered -- that is,not covered by any patents -- lossless data-compression library for use on virtually anycomputer hardware and operating system.
Available versions: 1.2.10, 1.2.11-GCCcore-6.3.0, 1.2.11-intel-2016a, 1.2.5-goolf-1.4.10, 1.2.5-goolf-1.7.20, 1.2.7-foss-2016a, 1.2.7-goolf-1.4.10, 1.2.7-goolf-1.7.20, 1.2.7-intel-2015b, 1.2.7-intel-2016a, 1.2.8, 1.2.8-GCC-4.9.3-binutils-2.25, 1.2.8-GCCcore-4.9.3, 1.2.8-GCCcore-5.4.0, 1.2.8-GNU-4.9.3-2.25, 1.2.8-foss-2015b, 1.2.8-foss-2016a, 1.2.8-foss-2016b, 1.2.8-goolf-1.4.10, 1.2.8-goolf-1.7.20, 1.2.8-intel-2015b, 1.2.8-intel-2016a, 1.2.8-GCCcore-6.1.0, 1.2.8-intel-2017a, 1.2.11, 1.2.11-GCCcore-6.4.0, 1.2.8-intel-2016b, 1.2.11-GCCcore-7.3.0, 1.2.11-GCCcore-5.4.0, 1.2.9-intel-2017a
Command: module load zlib
[edit] ZeroMQ
Available versions: 3.2.5-intel-2015b, 4.1.4-foss-2016a
Command: module load ZeroMQ