Maq

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Attention: Research Computing Documentation has Moved
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As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

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Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. It is particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.

Project website: http://maq.sourceforge.net/maq-man.shtml

Load SGE module

The following Modules files should be loaded for this package:

module load maq/maq-0.7