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Attention: Research Computing Documentation has Moved

Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.

As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team


FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK.

FSL on Cheaha

FSL-4.1.6 is installed on Cheaha. module command can be used to find out the current installed version. For FSL, use

module whatis fsl

Environment Setup

Before running any FSL applications like bedpostx, set up the necessary environment with the following command:

module load fsl/fsl-4.1.6